Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_O08
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0041 + 10046063-10046170,10046284-10046742 34 0.13
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900... 32 0.70
04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946... 31 1.6
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 30 2.1
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 30 2.8
08_01_0397 - 3509186-3510291,3510322-3512335 29 5.0
03_05_1084 - 30252933-30253019,30253107-30253226,30253498-302535... 29 5.0
03_02_0560 + 9462996-9463454 29 5.0
01_05_0530 + 22984672-22984821,22985444-22985676,22986659-229867... 29 5.0
05_01_0193 + 1400963-1401083,1401671-1401888,1401983-1402172,140... 29 6.6
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 29 6.6
>04_03_0041 + 10046063-10046170,10046284-10046742
Length = 188
Score = 34.3 bits (75), Expect = 0.13
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +2
Query: 179 DMIHEALGELKTRKGVSLYAIKKYITEKYRVDADKINY--LIKKQIKNGVIDGAIVQTKG 352
+MI EA+ LK R G S +AI KY+ EK+ NY ++ Q++ G +V+ K
Sbjct: 36 EMIKEAITVLKERTGSSAHAIAKYMEEKHGASL-PANYKKMLSIQLRGFASKGKLVKVK- 93
Query: 353 VGAAGSFKLA-PIKEKKKQTP 412
S+KL+ K+ K P
Sbjct: 94 ----ASYKLSDAAKDSPKAKP 110
>03_02_0507 -
8999902-9000649,9001106-9001225,9001314-9001394,
9001591-9001613
Length = 323
Score = 31.9 bits (69), Expect = 0.70
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 103 AQSDSKEEKTNHPNRRSLDREEKNKRHDPRGSRRTED*KRRFIIRHQE 246
++SD KE K + L +EE+ +R + R R+ + + ++H E
Sbjct: 219 SESDDKESKRRRKEEKRLRKEERRRRREERHRRKADRQASKLKLKHAE 266
>04_04_0689 -
27292271-27292709,27293717-27293856,27294572-27294664,
27295614-27296012,27296258-27296392,27296482-27296835
Length = 519
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 629 AAGEVADAPKRKKQNRPKTRKLPPKRSPC**EGK 730
AA E + PK +++ RP R+LPP P +GK
Sbjct: 61 AAAEASRGPKHRRRRRPGGRRLPPPPPPGRRKGK 94
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 590 TKANTKKPSKDKMAAGEVADAPKRKKQNRPKTRKLPPKR 706
T+ +T+K + A+ + D P K+ RPK P K+
Sbjct: 13 TRTSTRKRAASASASAKATDEPSTKRTRRPKAETKPRKK 51
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 106 QSDSKEEKTNHPNRRSLDREEKNKRHDPRGSRRTED*KRR 225
+ D ++E+ RRS DRE++ ++ R R +D +RR
Sbjct: 103 EKDREKERDKDKERRSRDREKEKEKEKEREREREKDRERR 142
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 645 RTRRKEKNKIVQRRANSRQKEVHADEKEKHRE 740
+ R KE++K +RR+ R+KE EKEK RE
Sbjct: 104 KDREKERDKDKERRSRDREKE---KEKEKERE 132
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +1
Query: 106 QSDSKEEKTNHPNRRSLDREEKNKRHDPRGSRRTE----D*KRRFIIRHQEIHHR 258
+ + ++E+ R DREE+++R + E D KRR H HHR
Sbjct: 78 EREKEKERERARRREERDREERSRRREAAAEEEEEDVDRDRKRRRRSSHHHHHHR 132
>03_05_1084 -
30252933-30253019,30253107-30253226,30253498-30253527,
30253608-30253652,30253807-30253851,30253927-30254154,
30254599-30254673,30255426-30255547,30256429-30256543,
30257493-30257750
Length = 374
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 747 LNIPYAFPSHQHGLLFGGSLRVFGRFCFFLF 655
+NIPY + + HG +F + V G FC F+F
Sbjct: 330 MNIPYTW-NDNHGYVFKWVVLVSGLFCAFMF 359
>03_02_0560 + 9462996-9463454
Length = 152
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 605 KKPSKDKMAAGEVADAPKRKKQNRPKTRKLPPKRSPC**EGKA 733
KKP++ K AAGE A K +PK K P EG A
Sbjct: 7 KKPAEKKPAAGEEKSAEKAPAGKKPKAEKRLPASKASSKEGGA 49
>01_05_0530 +
22984672-22984821,22985444-22985676,22986659-22986743,
22986953-22987036,22987114-22987455
Length = 297
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 170 RTKDMIHEALGELKTRKGVSLYAIKKYITEKYRVDADKINYLIKKQIKNGVIDGAIVQ 343
R D+I EA+ +LK G + I YI E+Y D L+ ++K V G +++
Sbjct: 128 RLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPED-FQRLLSTKLKALVATGKLIK 184
>05_01_0193 +
1400963-1401083,1401671-1401888,1401983-1402172,
1402391-1402782,1402971-1403381
Length = 443
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 511 QTEAGCSERENRETEKQEDG*ESIENHESEYEKTVERQ 624
+ AGC ER N E + ++D S+ + + + T +RQ
Sbjct: 368 EVPAGCEERINAEPQNRKDEDPSVTGNTKKDQSTFDRQ 405
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 639 RSRTRRKEKNKIVQRRANSRQKEVHADEKEKHREYLKPPK 758
R R RRKE+ + +RR ++ EKE+ RE K K
Sbjct: 135 RRRRRRKEREEEERRRRRKDKERRKRKEKERERERKKKEK 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,618,619
Number of Sequences: 37544
Number of extensions: 252144
Number of successful extensions: 1086
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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