Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_O07
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.002
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 35 0.017
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 34 0.031
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.031
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 33 0.053
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 32 0.093
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.28
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.38
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.50
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.50
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.66
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 1.1
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 3.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 4.6
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 6.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.1
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 26 8.1
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 8.1
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
GF F EF+ P DAE A+ GLDG+ G + + +
Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 34.7 bits (76), Expect = 0.017
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVE 188
G AF F P +A+ V+ L+G I GRR RVE
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVE 306
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.9 bits (74), Expect = 0.031
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVE 188
G AF F P +A+ V+ L+G I GRR RVE
Sbjct: 244 GLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.9 bits (74), Expect = 0.031
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 93 FAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMSN 197
+AFVEF+ P DA+ A+ ++ +C R RV +N
Sbjct: 48 YAFVEFDEPEDAKEAMENMNYSILCDRCIRVSPAN 82
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 33.1 bits (72), Expect = 0.053
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 268 RCYDCGDRGHYARDC 312
RCY+CG+ GH AR+C
Sbjct: 18 RCYNCGENGHQAREC 32
Score = 29.9 bits (64), Expect = 0.50
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 271 CYDCGDRGHYARDC 312
CY CG GH ARDC
Sbjct: 118 CYACGSYGHQARDC 131
Score = 29.5 bits (63), Expect = 0.66
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Frame = +1
Query: 229 HLXSRLP--PRPYDD-RCYDCGDRGHYARDC 312
HL P P P CY CG GH ARDC
Sbjct: 68 HLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 29.1 bits (62), Expect = 0.87
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 229 HLXSRLPPRPYDDRCYDCGDRGHYARDC 312
H S + CY CG GH RDC
Sbjct: 46 HKASECTEPQQEKTCYACGTAGHLVRDC 73
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +1
Query: 190 CLMGVAVMAAG-VHHLXSRLPPRPYDDRCYDCGDRGHYARDC 312
C MGV + G + H CY C GH A +C
Sbjct: 131 CTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 32.3 bits (70), Expect = 0.093
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 27 REFLRLFIGPLRNVWVAXNPP-----GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEM 191
REF R GP+ + V N G+AFV FE RD + A + G + GRR V++
Sbjct: 118 REFTRY--GPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDV 175
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 30.7 bits (66), Expect = 0.28
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVE 188
GF FVE E RDA V G+ G R VE
Sbjct: 38 GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE 70
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.38
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMSN 197
G+ +V+FE P A+ AV + I GR +++SN
Sbjct: 305 GYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN 340
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.9 bits (64), Expect = 0.50
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 81 NPPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARV 185
NP GFA+++F DA A LD + GR V
Sbjct: 362 NPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMSN 197
GF FVEF+ A A+ ++G + G + +++S+
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSH 701
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.9 bits (64), Expect = 0.50
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 84 PPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVE 188
P G AFV F D + A+ L+G+T+ R V+
Sbjct: 88 PSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQ 122
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.5 bits (63), Expect = 0.66
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 84 PPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVE 188
P G+ F E+ P A AVR L+ RR RV+
Sbjct: 45 PKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVD 79
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 93 FAFVEFEXPRDAEXAVRGLDGRTI 164
FAFVE+E RDAE A + GR +
Sbjct: 49 FAFVEYEDSRDAEDAYYEVHGRRL 72
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 160 VRPSKPRTAXSASRGXSNSTNAKPGGXLATHTFLSGPIKS 41
++P+ PRT+ S+S S ++ K G L TH+ + K+
Sbjct: 155 LKPNIPRTSMSSSPTASRTSLRKGAGELETHSAVKSAKKA 194
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 250 PRPYDDRCYDCGDRGHYARDC 312
P P CY CG +GH+ + C
Sbjct: 178 PPPPGYICYRCGQKGHWIQAC 198
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +3
Query: 18 THYREFLRLF--IGPLRNVWVAXNPPG----FAFVEFEXPRDAEXAVRGLDGRTICGR 173
T R L LF IG + +A P G F V+FE DA ++ L+G GR
Sbjct: 291 TSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGR 348
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 271 CYDCGDRGHYARDC 312
C CG GH ARDC
Sbjct: 336 CRHCGSIGHIARDC 349
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 241 RLPPRPYDDRCYDCGDRGHYARDC 312
R+ R D C+ C +GH +DC
Sbjct: 69 RINQRNRDKFCFACRQQGHIVQDC 92
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 644 FRNIILLIYINSMWFQSICWTYNFS 570
FR I + +N+ WFQS+ W Y S
Sbjct: 833 FRYFIWSVPMNN-WFQSLVWLYTLS 856
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,167
Number of Sequences: 5004
Number of extensions: 33817
Number of successful extensions: 116
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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