Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_O07
(875 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 73 3e-13
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 73 3e-13
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 73 3e-13
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 55 8e-08
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 47 2e-05
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 47 2e-05
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 40 0.002
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 40 0.003
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 40 0.003
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 40 0.003
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 36 0.038
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 36 0.038
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 36 0.050
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 35 0.066
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 35 0.088
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 35 0.088
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 35 0.088
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 35 0.088
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 35 0.088
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 33 0.35
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 33 0.35
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 33 0.35
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 32 0.47
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 32 0.47
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 31 0.82
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 31 1.1
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 31 1.1
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 31 1.1
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical pr... 30 1.9
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 29 4.4
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 29 4.4
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 4.4
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 29 4.4
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 29 4.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.8
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 29 5.8
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 5.8
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 5.8
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 28 7.6
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 72.9 bits (171), Expect = 3e-13
Identities = 33/48 (68%), Positives = 37/48 (77%)
Frame = +3
Query: 51 GPLRNVWVAXNPPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
G +R VWVA PPGFAFVE++ RDAE AVR LDG ICG RARVE+S
Sbjct: 27 GRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 72.9 bits (171), Expect = 3e-13
Identities = 33/48 (68%), Positives = 37/48 (77%)
Frame = +3
Query: 51 GPLRNVWVAXNPPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
G +R VWVA PPGFAFVE++ RDAE AVR LDG ICG RARVE+S
Sbjct: 27 GRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 72.9 bits (171), Expect = 3e-13
Identities = 33/48 (68%), Positives = 37/48 (77%)
Frame = +3
Query: 51 GPLRNVWVAXNPPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
G +R VWVA PPGFAFVE++ RDAE AVR LDG ICG RARVE+S
Sbjct: 27 GRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 54.8 bits (126), Expect = 8e-08
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = +3
Query: 48 IGPLRNVWVAXNPPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEM 191
+GP++++W+A PPGFAFV F+ A AV+ L+G+ IC A+VEM
Sbjct: 51 MGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/36 (63%), Positives = 24/36 (66%)
Frame = +3
Query: 87 PGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
P FAFVEFE RDAE AVR DG GRR RVE +
Sbjct: 46 PAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/36 (63%), Positives = 24/36 (66%)
Frame = +3
Query: 87 PGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
P FAFVEFE RDAE AVR DG GRR RVE +
Sbjct: 46 PAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVE 188
GF FV+F+ RDA+ AV L+G+ +CG R +E
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERVILE 68
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRAR--VEMS 194
GFAFV+FE RDAE A LDG+T+ G R VEM+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRAR--VEMS 194
GFAFV+FE RDAE A LDG+T+ G R VEM+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRAR--VEMS 194
GFAFV+FE RDAE A LDG+T+ G R VEM+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
GF FVEF+ RDAE AV L+G+ + G R ++ S
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
GF FVEF+ RDAE AV L+G+ + G R ++ S
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
GF FVEF+ RDAE AV L+G+ + G R ++ S
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 35.9 bits (79), Expect = 0.038
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 48 IGPLRNVWVAXN-----PPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMSN 197
IG + NV + + P GFAF+EF A+ AV ++G GR RV ++N
Sbjct: 28 IGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLAN 82
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.9 bits (79), Expect = 0.038
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = +3
Query: 84 PPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMSN 197
P GFAFVEF A+ AV L+G GR RV +N
Sbjct: 46 PRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYAN 83
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 35.5 bits (78), Expect = 0.050
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 271 CYDCGDRGHYARDC 312
CY+CG RGHY+RDC
Sbjct: 69 CYNCGGRGHYSRDC 82
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 262 DDRCYDCGDRGHYARDC 312
+ RCY C + GH +RDC
Sbjct: 130 EKRCYQCQETGHISRDC 146
Score = 29.5 bits (63), Expect = 3.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 271 CYDCGDRGHYARDC 312
CY+C + GH++RDC
Sbjct: 37 CYNCQETGHFSRDC 50
Score = 28.7 bits (61), Expect = 5.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 268 RCYDCGDRGHYARDC 312
+CY+CG GH +R+C
Sbjct: 108 KCYNCGRSGHISREC 122
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 35.1 bits (77), Expect = 0.066
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 84 PPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVE 188
P G+ F+EF + AE A+R L+G + GR RV+
Sbjct: 58 PKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 34.7 bits (76), Expect = 0.088
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 48 IGPLRNVWVAXNP---PGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
+GP+ +V + N GF FV + P DA+ A +G TI GRR V ++
Sbjct: 5 VGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 34.7 bits (76), Expect = 0.088
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 48 IGPLRNVWVAXNP---PGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
+GP+ +V + N GF FV + P DA+ A +G TI GRR V ++
Sbjct: 123 VGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 34.7 bits (76), Expect = 0.088
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
GF FV F RDAE A+ DG+ + GR RV ++
Sbjct: 61 GFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 34.7 bits (76), Expect = 0.088
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
GF FV F RDAE A+ DG+ + GR RV ++
Sbjct: 61 GFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLA 95
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 34.7 bits (76), Expect = 0.088
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 48 IGPLRNVWVAXNP---PGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
+GP+ +V + N GF FV + P DA+ A +G TI GRR V ++
Sbjct: 123 VGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
GFAF+ + AE A +DGR I GR+ RV +
Sbjct: 151 GFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
GFAF+ + AE A +DGR I GR+ RV +
Sbjct: 151 GFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFA 185
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
G+ +VE++ DAE +++ +DG I G VEM+
Sbjct: 176 GYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMT 210
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 32.3 bits (70), Expect = 0.47
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARV 185
GF FV E P+DAE A + L G I GR+ V
Sbjct: 193 GFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 32.3 bits (70), Expect = 0.47
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARV 185
GF FV E P+DAE A + L G I GR+ V
Sbjct: 193 GFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 31.5 bits (68), Expect = 0.82
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 262 DDRCYDCGDRGHYARDC 312
D CY CG++GHYA C
Sbjct: 249 DVTCYKCGEKGHYANRC 265
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 51 GPLRNVWVAXNPPG-----FAFVEFEXPRDAEXAVRGLDGRTICGRRARV 185
GP++++ ++ +P FAFVE+E P A A ++G+ + GR +V
Sbjct: 126 GPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 51 GPLRNVWVAXNPPG-----FAFVEFEXPRDAEXAVRGLDGRTICGRRARV 185
GP++++ ++ +P FAFVE+E P A A ++G+ + GR +V
Sbjct: 126 GPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 51 GPLRNVWVAXNPPG-----FAFVEFEXPRDAEXAVRGLDGRTICGRRARV 185
GP++++ ++ +P FAFVE+E P A A ++G+ + GR +V
Sbjct: 126 GPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 84 PPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
P GFAFVEF A+ AV +G GR RV ++
Sbjct: 44 PRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
G+A+V F+ P DAE A+ ++ I GR R+ S
Sbjct: 99 GYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWS 133
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
G+A+V F+ P DAE A+ ++ I GR R+ S
Sbjct: 99 GYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWS 133
>Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical
protein F09F3.12 protein.
Length = 307
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 623 IYINSMWFQSICWTYNFSSI 564
IY +S+WFQ C T++F+SI
Sbjct: 245 IYPDSIWFQFFCLTFSFASI 264
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGR 173
GF FV FE P +A AV ++ + +C +
Sbjct: 358 GFGFVCFEKPEEATSAVTEMNSKMVCSK 385
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
G+A+V F+ P DAE A+ ++ + G+ R+ S
Sbjct: 74 GYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWS 108
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGR 173
GF FV FE P +A AV ++ + +C +
Sbjct: 298 GFGFVCFEKPEEATSAVTEMNSKMVCSK 325
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
G+A+V F+ P DAE A+ ++ + G+ R+ S
Sbjct: 74 GYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWS 108
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGR 173
GF FV FE P +A AV ++ + +C +
Sbjct: 295 GFGFVCFEKPEEATSAVTEMNSKMVCSK 322
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGR 173
GF FV FE P +A AV ++ + +C +
Sbjct: 358 GFGFVCFEKPEEATSAVTEMNSKMVCSK 385
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
G+A+V F+ P DAE A+ ++ + G+ R+ S
Sbjct: 74 GYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWS 108
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 75 AXNPPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEM 191
A +P G V F +++ AV+ L GR + GR+ E+
Sbjct: 355 ANHPDGVVSVTFPTTEESDMAVKYLHGRVVDGRKLTAEL 393
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 72 VAXNPPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMSN 197
V N GF FVEF DA+ A++ L+ + G+ +V ++
Sbjct: 49 VTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 90
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 72 VAXNPPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMSN 197
V N GF FVEF DA+ A++ L+ + G+ +V ++
Sbjct: 59 VTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 100
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 90 GFAFVEFEXPRDAEXAVRGLDGRTICGRRARVEMS 194
GF FVEF+ DA A+ ++ + G+ RV +
Sbjct: 53 GFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 5.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 271 CYDCGDRGHYARDC 312
C +CG GH+A+DC
Sbjct: 641 CRNCGQEGHFAKDC 654
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 5.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 271 CYDCGDRGHYARDC 312
C +CG GH+A+DC
Sbjct: 641 CRNCGQEGHFAKDC 654
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 75 AXNPPGFAFVEFEXPRDAEXAVRGLDGRTICGRRARVE 188
A P G+AF+E+ + A + DG + G+R V+
Sbjct: 140 AGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVD 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,629,747
Number of Sequences: 27780
Number of extensions: 196575
Number of successful extensions: 585
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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