Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O05
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    44   3e-05
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    40   7e-04
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    33   0.075
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    29   0.93 
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   4.9  

>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 113 ADTSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGYPKKTKKT 241
           A+ + A EEL W T  +I E+C D WRWQ   P G+     KT
Sbjct: 311 ANPTRANEELKWKTSRSIYEICVDTWRWQQKYPYGFDLTHTKT 353


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 113 ADTSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGY 220
           A  + A  EL W  +L+I + C D W+W   NP G+
Sbjct: 313 ASPNRANSELKWKAELSITDACRDLWKWTIENPFGF 348


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 32.7 bits (71), Expect = 0.075
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +2

Query: 23  TIGNSLRFTKAKSATQCTSIEDLETSAPMWADTSLAKEELGWSTQLTIEEMCTDFWRW-Q 199
           +IG SL  +   S  + TS ++++    +  D S  KEE+G+     + E    F RW +
Sbjct: 8   SIGTSLTPSPTGSIDEYTS-KEVKHPEDVKVDASYEKEEVGYGELEVVPERGNLFQRWYR 66

Query: 200 TMNP--DGYPKKTKKT 241
           +  P  DG P+K K+T
Sbjct: 67  SFLPPEDGKPQKLKRT 82


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 245 IVVNG-KS*FSLFIYLFI*TNLISYNYAIILQYTINFYL 358
           +V+N  +S F L++Y  +  N+I Y   +I+  T+ FY+
Sbjct: 828 VVLNRVRSRFGLYLYYDVVKNMIDYRKDLIVSMTLTFYI 866


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 21  SL*GIP*DLQKPRVPLNVRRSKTWRHQRRCGRTPHWLKKNSDGP 152
           S+  +P +   P  P+N   +K+W H       P  LK  SD P
Sbjct: 270 SMKDVPNNPFTPFSPINPYYAKSWNHTASAPLLPPGLKNGSDYP 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,628
Number of Sequences: 5004
Number of extensions: 47381
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)