Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O05
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical p...    58   9e-09
Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical p...    58   9e-09
U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin (dro...    29   3.6  
AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical
           protein C47B2.6b protein.
          Length = 349

 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +2

Query: 101 APMWADTSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGY 220
           A ++ D SLA+E+LGW  +  +EEMC D W WQT NP G+
Sbjct: 308 ASVYCDPSLAQEKLGWRAETGLEEMCADLWNWQTKNPQGF 347


>Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical
           protein C47B2.6a protein.
          Length = 347

 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +2

Query: 101 APMWADTSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGY 220
           A ++ D SLA+E+LGW  +  +EEMC D W WQT NP G+
Sbjct: 306 ASVYCDPSLAQEKLGWRAETGLEEMCADLWNWQTKNPQGF 345


>U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin
           (drosophila neuroligin-like) homolog protein 1 protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 136 RTRMVHSINYRRDVYGFLAMADNESRRIPEKDQ 234
           R  +V ++NYR   +GF++M D+E+     +DQ
Sbjct: 217 RGMVVVTVNYRLGAFGFMSMGDSETGNYGLQDQ 249


>AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical
           protein Y4C6B.2a protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 252 TTISVFLVFFGYPSGFIVCHRQ 187
           TTISV L+ FG    + VCH++
Sbjct: 171 TTISVVLIIFGTVQDYEVCHKE 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,202,791
Number of Sequences: 27780
Number of extensions: 272297
Number of successful extensions: 600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)