Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_O04
(892 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 31 0.17
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 31 0.29
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 29 0.67
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 28 1.6
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 28 1.6
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 27 3.6
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 4.7
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 27 4.7
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 26 6.3
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.3
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 8.3
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 326 AIYRTIGKSDNSILSTVSSCLTNGYERRKI---IDRLSSHIDSKKASKL 463
A Y +GK D +++ + SC+ +G+ + ++RL + KK+S L
Sbjct: 226 AAYEQLGKLDEALMDSTVSCIFDGFANESMTATVERLLKKVAEKKSSAL 274
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +1
Query: 658 EGETPGSKMAILSADRIKLMMANAQKEIEERKRAL----QVLKGVETKPSVNAAXAA 816
+G+ +L DR++ + + QKEIEE++R L + L+ +E K + + A A
Sbjct: 337 DGKNLSQHDQVLREDRLRAIELSVQKEIEEKRRQLLAREEALRALEEKLAASTAAMA 393
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 29.5 bits (63), Expect = 0.67
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 13/174 (7%)
Frame = +2
Query: 83 NVLLLTNYLENVIQKCVNLS*TEIYYVLL---NKKFNYKLSNLT*KTAKVIG*VFGFVLF 253
N+ LT LEN +KC NLS + Y+ L ++ K+S+L K G
Sbjct: 1125 NIKSLTKELENKEEKCQNLSDASLKYIELQEIHENLLLKVSDLENYKKKYEGLQLDLEGL 1184
Query: 254 SCCDNMALQLSR--REVEELRSSIDR--AIYR---TIGKSDNSILSTVSSCLTNGYERRK 412
D +LS+ R++ S+ R A Y+ ++ S+N LS S LT K
Sbjct: 1185 KDVDTNFQELSKKHRDLTFNHESLLRQSASYKEKLSLASSENKDLSNKVSSLT------K 1238
Query: 413 IIDRLSSHIDSKKASKLTDKVIALAQELITSSKTSSKRKHE---SDRDRDGKRS 565
++ LS + K +L K+ L E KT K + + RD + RS
Sbjct: 1239 QVNELSP--KASKVPELERKITNLMHEYSQLGKTFEDEKRKALIASRDNEELRS 1290
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +2
Query: 248 LFSCCDNMALQLSRREVEELRSSIDRAIYRTIGKSDNSILSTVSSCLTNGYERRKIIDRL 427
+FS +++ +L RE + D A G +S +SSC+ + +D
Sbjct: 9 IFSLPEDILAKLELREEYSVEEKTDSANLSNQGDIVDSTQKNISSCVNCQIDNLHTLDER 68
Query: 428 SSHIDS 445
SHI S
Sbjct: 69 KSHIKS 74
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 299 EELRSSIDRAIYRTIGKSDNSILSTVSSCLTNGYERRKIIDRLSSHIDSKKASKLTDKVI 478
+E+ +S A Y T+GK IL+T L + + K + H+D +A + D+ +
Sbjct: 224 QEILASYKEA-YETLGKIGKLILTTYFGSLQSNADVLKGLPIAGVHVDVVRAPENLDRAL 282
Query: 479 ALAQE 493
A+ E
Sbjct: 283 AVLGE 287
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 781 QPPSALEELSCVPLSLSERWPSLT*SCLHSG*PSSILESLLRNSG 647
+PPS+ + L+L E W L C+H G PS I ++ N G
Sbjct: 160 EPPSSNSLQNNKALALIEAWSFLGECCIH-GTPSGIDNAVATNGG 203
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 44 WTEYIVTEIDLNKNVLLLTNYLENV-IQKCVNLS*TEIYYVLLNKKFNYKLSNL 202
WT Y+V E NVLLL + + + + + V ++Y V +K+N +NL
Sbjct: 113 WTYYLVCEFFAAGNVLLLDGHYKILSLLRVVTFDKDQVYAV--GQKYNLDKNNL 164
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 4.7
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Frame = +2
Query: 284 SRREVEELRSSIDRAIYRTIGKSDNSILSTVSSC-----LTNGYERRKIIDRLSS--HID 442
SR E + +S D + +G DNS + + S + + E ++ ++S+ +ID
Sbjct: 93 SRAEDSDYATS-DLSESSDVGDDDNSCIFSFSKVPMQKDVASIKEEERLDPKISTLNNID 151
Query: 443 SKKASKLTDKVIALAQELITSSKTSSKRKHES-DRDRDGKRSRYEDS 580
+ KLT+ V + +TSSK SS + S D D RS E+S
Sbjct: 152 AIANLKLTNMVESSQAVNLTSSKQSSINQQSSVSTDYDDLRSISEES 198
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 641 HQFHSFPPHLFSPHKLSPLVLNLRTGISYHLGL 543
H F S P LFS L+ L ++ +GI Y + L
Sbjct: 237 HLFRSLPSPLFSAEFLNGLTDHMDSGIDYAVSL 269
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 652 YSEGETPGSKMAILSADRIKLMMANAQKEIEERKRALQVLKGVETKPSVN 801
+SE + P + LSA+ +KL+ + + IE + + + V + S N
Sbjct: 404 FSERDLPNHRRKQLSAEEMKLIRSKLSESIESGINTISIEENVSSTNSDN 453
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 156 YISV*LRLTHFWITFSR*FVNNNTFLFKSISVTMYSV 46
Y ++ L +T FW F F + +F+S S+++Y+V
Sbjct: 972 YKNIALYMTQFWYAFCNAF--SGQVIFESWSISLYNV 1006
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,517
Number of Sequences: 5004
Number of extensions: 53262
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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