Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O04
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0541 + 4702930-4703328,4703411-4703506,4703601-4703649,470...    31   0.93 
12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956...    31   1.2  
07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676...    29   3.8  
03_05_0209 + 22014556-22015308                                         29   3.8  
12_02_1224 + 27158810-27161366,27161593-27161969                       29   5.0  
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368...    29   5.0  
10_08_0529 - 18565749-18565804,18566022-18566128,18566206-185664...    29   6.6  

>08_01_0541 +
           4702930-4703328,4703411-4703506,4703601-4703649,
           4703771-4703865
          Length = 212

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 401 ERRKIIDRLSSHIDSKKASKLTDKVIALAQELITSSKTSSKRKHESDRDRDGKRSRY 571
           E RK+ D++S H ++ KAS         A        T  +    +DR  DG RSRY
Sbjct: 149 EHRKMADKISEHAEAVKASYKKFVAEVQASTSRVCKVTIPEMAKSADRAIDGLRSRY 205


>12_01_0961 +
           9566730-9566998,9567096-9567187,9567294-9567427,
           9567542-9567591,9569026-9569100,9569179-9569734
          Length = 391

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/93 (27%), Positives = 42/93 (45%)
 Frame = +2

Query: 263 DNMALQLSRREVEELRSSIDRAIYRTIGKSDNSILSTVSSCLTNGYERRKIIDRLSSHID 442
           D++A Q+S+R     +  I  +    IG       ST SS  TN         R S+ + 
Sbjct: 245 DDLAQQISQRSNSMAQGGIRSSSSNGIGYITQR--STRSSA-TNNRSFTTTGSRRSTFVA 301

Query: 443 SKKASKLTDKVIALAQELITSSKTSSKRKHESD 541
            + +S  T +    A +L+ S++  S R H+SD
Sbjct: 302 QEGSSTATGRGFVRASQLVPSARVVSVRSHQSD 334


>07_03_1187 +
           24667044-24667091,24667196-24667274,24667520-24667695,
           24668216-24668766,24669080-24669941
          Length = 571

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -3

Query: 569 TGISYHLGLYHSHVSFSMKFLM------TLSVPGPKL*PYRLVCLPFWSLCAMKV 423
           TGI + +G+   H +F  +  +      +LS+P   L  + ++C+ FW     KV
Sbjct: 347 TGIFFCVGISQMHTTFIQQGTVMNTKIGSLSIPAASLYSFEVICVTFWVFLVNKV 401


>03_05_0209 + 22014556-22015308
          Length = 250

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 829 SGVGPQPPQH*HSVWSQPPSALEELSCVP 743
           +GVG +  QH H V  +P SA E  SCVP
Sbjct: 107 TGVGDKQEQHHHQVGVEPSSATE--SCVP 133


>12_02_1224 + 27158810-27161366,27161593-27161969
          Length = 977

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 14  TTHYRESLXFWTEYIVTEIDLNKNVLLLTNYLENVIQKCVNLS*TEIYYVLLNKKFNYKL 193
           TT     +  W   + +  DL  +  LLT ++   + +  NL   E+YY LL      +L
Sbjct: 211 TTCMHGGVPAWLGNMTSLTDLELSGNLLTGHIPLSLARLPNLQLLELYYNLLEGVVPAEL 270

Query: 194 SNLT 205
            NLT
Sbjct: 271 GNLT 274


>05_07_0310 +
           29135875-29136052,29136206-29136617,29136723-29136867,
           29137944-29138102,29138183-29138242,29138349-29138546
          Length = 383

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 664 ETPGSKMAILSADRIKLMMANAQKEIEERKRALQVLKGVETKPSVNAAXAAXQHLKV 834
           E+P ++      +  ++ +   +K +EE+++AL  LK  E K  V+    A Q L V
Sbjct: 231 ESPENEEEEKEPEDKEMTLEEYEKVLEEKRKALLALKAEERKVEVDKELQAMQQLSV 287


>10_08_0529 -
           18565749-18565804,18566022-18566128,18566206-18566410,
           18566500-18566812
          Length = 226

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/75 (22%), Positives = 37/75 (49%)
 Frame = +2

Query: 233 VFGFVLFSCCDNMALQLSRREVEELRSSIDRAIYRTIGKSDNSILSTVSSCLTNGYERRK 412
           V G+ +++C  ++   +++  V+E R        R  G  +  +++ V  C      RR+
Sbjct: 84  VVGYAMYTCATSLCASITKLAVKESR--------RRQGHGEALLMAAVEGC------RRR 129

Query: 413 IIDRLSSHIDSKKAS 457
            + R+S H+D  +A+
Sbjct: 130 RVQRVSLHVDPARAA 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,653,054
Number of Sequences: 37544
Number of extensions: 316988
Number of successful extensions: 817
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)