Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O04
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49128-6|CAA88957.1|  621|Caenorhabditis elegans Hypothetical pr...    39   0.006
AF003131-6|AAB54131.2|  166|Caenorhabditis elegans Hypothetical ...    32   0.63 
U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti...    31   1.5  
Z81062-13|CAB82210.1|  333|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical ...    29   5.9  
U23173-1|AAC46708.1|  221|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z49128-6|CAA88957.1|  621|Caenorhabditis elegans Hypothetical
           protein M03C11.7 protein.
          Length = 621

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +2

Query: 332 YRTIGKSDNSILSTVSSCLTNGYERRKIIDRLSSHI-DSKKASKLTDKVIALAQELITSS 508
           Y +  K  + ++  V  CL  GY+  K+ DR+   I D +KA K+   V     +L    
Sbjct: 11  YLSRKKEQDKVIEAVERCLKKGYDYEKLKDRVQEAISDPQKARKVISAVCDHYPQL--RK 68

Query: 509 KTSSKRKHESDRDRDGKRSRYED 577
           +T + R  E   DRD KR R +D
Sbjct: 69  RTRTDRDGE---DRDRKRDRTDD 88


>AF003131-6|AAB54131.2|  166|Caenorhabditis elegans Hypothetical
           protein C09D1.2 protein.
          Length = 166

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 19/57 (33%), Positives = 34/57 (59%)
 Frame = +2

Query: 323 RAIYRTIGKSDNSILSTVSSCLTNGYERRKIIDRLSSHIDSKKASKLTDKVIALAQE 493
           +A YRTI K++ +IL   + C   G+E R+  D + + I+S+  ++    V+ LA+E
Sbjct: 36  QACYRTISKTNMTILEADNKCFDYGFEHRQ--DAMLTSIESESENQF---VMNLAKE 87


>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
           protein 5 protein.
          Length = 1198

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +2

Query: 386 LTNGYERRKIID---RLSSHIDSKKASKLTDKVIALAQEL 496
           LT+GYE RKI D   +L S ID  K ++L D +  L QEL
Sbjct: 199 LTSGYEERKINDLEAKLLSEID--KVAELEDHIQQLRQEL 236


>Z81062-13|CAB82210.1|  333|Caenorhabditis elegans Hypothetical
           protein F15A4.13 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 507 DDVISSWAKAMTLSVSLLAFLESMCDESRSIIFLRSYPFVKH 382
           D++ S + +  T    +    E  CDE+R+ IF+ S P V H
Sbjct: 279 DEIFSIYNEVFTFGYEI----ERSCDETRAAIFINSMPEVSH 316


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +2

Query: 308 RSSIDRAIYRTIGKSDNSILS-TVSSCLTNGYERRKIIDRLSSHIDSKKASKLTDKVIAL 484
           RSS   ++Y   G+S +S  S + S   +    R     R  S   S++ S+    + A 
Sbjct: 106 RSSSRGSVYGRTGRSRSSKRSRSRSRSRSRSRSRSYSRSRSGSRRSSRRRSRRRSSLKAR 165

Query: 485 AQELITSSKTSSKRKHESDRDRDGKRS 565
            +   T+ KT +KR+  S   +  KRS
Sbjct: 166 GRRASTAKKTPAKRRSRSRSQQKVKRS 192


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +2

Query: 308 RSSIDRAIYRTIGKSDNSILS-TVSSCLTNGYERRKIIDRLSSHIDSKKASKLTDKVIAL 484
           RSS   ++Y   G+S +S  S + S   T    R     R  S   S++ S+      A 
Sbjct: 112 RSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSSSRSRSGSRRSSRRRSRRRSSSKAR 171

Query: 485 AQELITSSKTSSKRKHESDRDRDGKRS 565
            +   T+ KT +KR+  S   +  KRS
Sbjct: 172 GRRASTAKKTPAKRRSRSRSQQKVKRS 198


>Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical
           protein K09B11.2 protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +2

Query: 242 FVLFSCCDNMALQLSRREVEELRSSIDRAIYRTIGKS----DNSILSTVSSCLTNGYERR 409
           F+++       L+     + +LR+   R     IG       N + S V+ CL+NGYE  
Sbjct: 156 FIIYPQQQEAQLKSQMNRLNKLRNDGQRTTILPIGHKGAGKSNLMRSLVNRCLSNGYEHV 215

Query: 410 KIID 421
            ++D
Sbjct: 216 YVLD 219


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +2

Query: 308 RSSIDRAIYRTIGKSDNSILS-TVSSCLTNGYERRKIIDRLSSHIDSKKASKLTDKVIAL 484
           RSS   ++Y   G+S +S  S + S   T    R     R  S   S++ S+      A 
Sbjct: 112 RSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSSSRSRSGSRRSSRRRSRHRSSSKAR 171

Query: 485 AQELITSSKTSSKRKHESDRDRDGKRS 565
            +   T+ KT +KR+  S   +  KRS
Sbjct: 172 GRRASTAKKTPAKRRSRSRSQQKVKRS 198


>AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical
           protein Y53F4B.1 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 332 YRTIGKSDNSILSTVSSCLTNGYERRKIIDRLSSHIDSKKASKLT 466
           Y   G   NSI  T+  CL N  E R    +L S ++S+    L+
Sbjct: 268 YDMSGCKSNSICETIEWCLNNTQESRPTFKQLLSKLNSRHTHYLS 312


>U23173-1|AAC46708.1|  221|Caenorhabditis elegans Hypothetical
           protein K07E1.1 protein.
          Length = 221

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 623 PPHLFSPHKLSPLVLNLRTGISY 555
           P HLF P K++P  L+ RTG  Y
Sbjct: 81  PHHLFPPKKITPDELSKRTGTLY 103


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
            protein Y53F4B.9 protein.
          Length = 1168

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 65   EIDLNKNVLLLTNYLENVIQKCVNLS*TEIYYVLLNKKFNYKLSNL 202
            EI LN+N   +  Y++N++  C N+   +     L++  N+ LS L
Sbjct: 962  EICLNRNQCRVQKYVQNLVYSCRNVIIDDATIKQLSESVNHDLSAL 1007


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,702,707
Number of Sequences: 27780
Number of extensions: 292319
Number of successful extensions: 1020
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)