Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_O04
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   1.2  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   6.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   8.6  

>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +2

Query: 59  VTEIDLNKNVLLLTNYLENVIQK 127
           +TE+D++K    L +++EN++Q+
Sbjct: 170 ITELDVSKRCKDLASFMENLLQE 192


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 500 TSSKTSSKRKHESDRDRDGKRS--RYE 574
           TSS+ S +R    DR+R+ K+   RYE
Sbjct: 227 TSSRYSRERSCSRDRNREYKKKDRRYE 253


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 243 SFCSVVVTIWHFSCPDARWRNY 308
           S CS+ V I+HF+ P   + ++
Sbjct: 286 SACSLFVVIFHFAHPREEFNHW 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,563
Number of Sequences: 438
Number of extensions: 3836
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)