Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N24
         (975 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.25 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   4.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.3  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   9.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 880 PGXXXPPPPXXGAXLPXTPPXXPP 951
           PG   PPPP  G   P  PP  PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 845 PXXPPPGXXXXSRGXXPPPP 904
           P  PPPG    S+   PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -2

Query: 938 GGVXGKXAPXFGGGGXXXPGIXXPXPXGGXRXXGPP 831
           GG+ G  A  FGGGG            GG R   PP
Sbjct: 166 GGMPGGFANMFGGGGAGPHARRSHPSFGGSRPSQPP 201


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +1

Query: 838 PFXLXPPXGXGXXIPGXXXPPPPXXGAXLPXTPPXXPP 951
           P  + PP      I G   PPPP  G      PP  PP
Sbjct: 748 PIPVPPPA----PIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 832 GGPFXLXPPXGXGXXIPGXXXPPPPXXGA 918
           GGP    PP G     P    PPPP   A
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 618 RFSHRLRPPWXSLPKFD 668
           R  HRL  PW  +P FD
Sbjct: 835 RTRHRLHIPWLKMPNFD 851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,634
Number of Sequences: 5004
Number of extensions: 30561
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)