Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N24
         (975 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    26   1.5  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   2.0  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   2.6  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   4.5  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -1

Query: 969 DKGXGGWGXXRGGXGQXXPXXWGGGGXXPRDXXXXPGGGXKGE 841
           D G GG G  RGG G        G G   RD     GGG  G+
Sbjct: 61  DDGYGGGG--RGGRGGRGGGRGRGRGRGGRDGGGGFGGGGYGD 101



 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -1

Query: 963 GXGGWGXXRGGXGQXXPXXWGGGGXXPRDXXXXPGGGXKG 844
           G GG     GG G+      GGG    R      GGG  G
Sbjct: 56  GYGGGDDGYGGGGRGGRGGRGGGRGRGRGRGGRDGGGGFG 95


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +3

Query: 855 PXRXGXPNPG-XXXPPPPKXGGXFAXNPPXXTPXXLPLYPG 974
           P   G P  G    P PP+ GG +   P    P    + PG
Sbjct: 195 PGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPG 235



 Score = 25.0 bits (52), Expect = 3.4
 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
 Frame = +1

Query: 835 GPFXLXPPXGXGXXIPG-XXXPPPPXXGAXLPXTPPXXPPXXXP 963
           GP  + PP   G    G    P PP  G   P  PP  P    P
Sbjct: 188 GPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYP-QPPGVPMPMRP 230


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 894 PPPPKXGGXFAXNPPXXTPXXLPL 965
           PPPP  GG     PP   P  L L
Sbjct: 531 PPPPPPGGAVLNIPPQFLPPPLNL 554


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -2

Query: 947 GXXGGVXGKXAPXFGGGGXXXPGIXXPXPXGG 852
           G  GG  G  AP  GGG    PG       GG
Sbjct: 201 GAGGGGSGGGAPGGGGGSSGGPGPGGGGGGGG 232


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,490
Number of Sequences: 2352
Number of extensions: 8597
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 106474641
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)