Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N22
(844 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 31 0.20
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 29 0.82
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 29 1.1
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 3.3
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 4.4
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.8
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 5.8
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 5.8
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 5.8
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 26 7.7
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 7.7
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 7.7
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 31.1 bits (67), Expect = 0.20
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 1/150 (0%)
Frame = +3
Query: 330 IFSETEESKAIRNILLCCTSIKLKADDPLPKMLCESCYNEIMNFNVFKTC-VDRVEENFQ 506
+++E EES A L+ K + C YNE++ + K C +D +N
Sbjct: 155 LYNEEEESDAATRRLM-------KRQNQRQIQYCIQRYNELVRDLIGKACDLDPRRKNVV 207
Query: 507 KYLETYQIALDKKTELKYDQDETNQNLYDEKFFEEHRKIQSSNTSTNVYQDKNNEHQVLM 686
K + + + E Q E ++ Y E F K QS + T + Q++ + +
Sbjct: 208 KLSDGERY--NSLQEASRKQSERDRRQYQETF-----KNQSIASWTIIDQEETSSDDESL 260
Query: 687 GKSKEKKDTLQFICDFCSKSFKHRYXLVDH 776
SKE ++ +C C+K+F+ + L +H
Sbjct: 261 --SKEIVNSNPIMCMVCNKNFRSQNQLENH 288
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 29.1 bits (62), Expect = 0.82
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 483 DRVEENFQKYLETYQIALDKKTELKYDQ 566
+ E FQK E YQ+ D K KYD+
Sbjct: 46 EAAREKFQKLAEAYQVLSDPKLREKYDK 73
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 393 KLKADDPLPKMLCESCYNEIMNFNVFKTCVDRVE--ENFQKYLETYQIALDKKTELK 557
KLKA L K++ E+ + + + +F+ CV ++ E Q Y+ TY K LK
Sbjct: 771 KLKASKELQKLIEENVFPKNLILFIFRKCVIGIKSFEKLQSYVFTYYCERYPKLILK 827
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 495 ENFQKYLETYQIALDKKTELKYDQ 566
E FQK E YQ+ D+K +YDQ
Sbjct: 49 EKFQKISEAYQVLGDEKLRSQYDQ 72
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Frame = +3
Query: 561 DQDETNQNLYDEKFFEE--HRKIQSSNTSTNVYQDKNNE---------HQVLMGKSKEKK 707
D+D + N + F E H SS T TN+ + N + HQVLM +SK
Sbjct: 564 DEDICSTNFIQQDFTMEYNHDFFSSSKTPTNISEQSNPDSNYDTLSLAHQVLMNESKSAN 623
Query: 708 DTLQFI 725
F+
Sbjct: 624 FDFSFL 629
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 669 EHQVLMGKSKEKKDTLQFICDFCSKSFKHRY 761
EH +L+ S ++K+T Q+I F RY
Sbjct: 604 EHSILINTSNDEKETAQWIVSFTGDIALSRY 634
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 26.2 bits (55), Expect = 5.8
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = +3
Query: 315 KTCYNIFSETEESKAIRNILLCCTSIKLKADDPLPKMLCESCYNEIMNFNVFKTCVDRVE 494
KT +F+E+E + N+L+ + LK +D L + + + F F+ ++++
Sbjct: 332 KTSSGVFAESELFTELINLLIEKSYPILKENDGSNNFLLHALCSSLEKFTDFQGS-EKIQ 390
Query: 495 ENFQKYLETYQIALDKKTELKYDQ-DETNQNLYDEKFFEEHRKIQSSNT 638
+ Q QI +D+ E + D+T + EK + +SN+
Sbjct: 391 KVSQILSSKLQILIDEHNETNSPKIDDTVVHACSEKLLRTLIQTVNSNS 439
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 504 QKYLETYQIALDKKTELKYDQDETNQNLYDEKFFEEHRKI 623
Q++ E + KT + + N+ LYD EE+RKI
Sbjct: 12 QRFAELRALRQAGKTRASTYESKENEELYDNVSEEEYRKI 51
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 680 NLMFIIFILVYICRCIT*LYFTM 612
+++FI F Y+CRC Y T+
Sbjct: 33 SVIFINFFFFYLCRCCVYFYHTL 55
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 374 QNIPYSFRFFSFRKNIIACFF 312
QN+ + RF SFRK+II C F
Sbjct: 195 QNLGWLIRF-SFRKSIICCLF 214
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +3
Query: 486 RVEENFQKYLETYQIALDKKTELKYDQDETNQNLYDEKFFEEHRKIQSSNTSTNVYQDKN 665
R + YLE ++ +K L D D T L ++K + I N N+ Q+K
Sbjct: 161 RYNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIY-IIGAIVDKNRYKNLCQNKA 219
Query: 666 NEHQVLMGK 692
+E + K
Sbjct: 220 SEQGIKTAK 228
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 351 SKAIRNILLCCTSIKLK 401
SK ++ ++CCTSI LK
Sbjct: 4 SKPLKGFVICCTSIDLK 20
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 708 LFSLWISPLKLDVHYFYLGIHL*MYYLTVFYDVLQKTFHHINF 580
L ++W +P + +FY G Y L++FY KT +NF
Sbjct: 1387 LLNIWRTPNERPGRHFYYGATYSRYLLSLFY----KTNDKVNF 1425
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 513 LETYQIALDKKTELKYDQDETNQNLYDEKF 602
+ TY + + +KTELK D N+YD F
Sbjct: 883 MATYSVEISEKTELKAD-FAVPHNMYDNGF 911
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,537
Number of Sequences: 5004
Number of extensions: 63812
Number of successful extensions: 201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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