Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N22
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881 30 2.0
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406... 29 3.5
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278 29 4.6
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 29 4.6
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319... 29 4.6
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385... 29 6.1
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 29 6.1
11_06_0037 - 19478885-19480472,19483125-19483267 28 8.1
>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
Length = 697
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +3
Query: 537 DKKTELKYDQDETNQNLYDEKFFEEHRKIQSSNTSTNVYQDKNNEHQVLMGKSKEKKDTL 716
D K + QDET ++ ++ KI+S K+N+H G+ +++ T
Sbjct: 570 DAKNAPRCAQDETVMTQVSQRLHDDLLKIKSEAPQHAYLGQKSNDHHSRAGQFRDQCTTS 629
Query: 717 QFICDFCS 740
+ D CS
Sbjct: 630 GNVYDLCS 637
>11_01_0518 +
4057428-4057538,4059609-4059801,4059921-4060025,
4060259-4060347,4060424-4060576,4060754-4060888,
4061241-4061407,4062129-4062223,4062367-4062740,
4062903-4063176,4063806-4063822
Length = 570
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = -3
Query: 761 VTMFKRFTAKITYKLQCVFFLFGFPH*NLMFIIFILVYICRCIT*LYFTM 612
+ M+ FT+ YK V++++GF L+F+I I+V IC I YF +
Sbjct: 461 IEMYFVFTSFWNYK---VYYVYGFML--LVFVILIIVTICVTIVGTYFLL 505
>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
Length = 368
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = +3
Query: 444 NEIMNFNVFKTCVDRVEENFQKYLETYQIALDKKTELKYDQDETNQNLYDEKFFEEHRKI 623
+ ++ FNV + + K ETY+ L + D ++N +L E + I
Sbjct: 268 SSVLRFNVLSRRICNMTSKASKSKETYEYLLGE-----IDNLDSNLDLIIEDAAQNQASI 322
Query: 624 QSSNTSTNVYQDK 662
SNT N +DK
Sbjct: 323 DESNTVENTSEDK 335
>02_05_0226 + 26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 519 TYQIALDKKTELKYDQDETNQNLYDEKFFEEHRKIQSSN 635
TY+ L+ E+K N +YD KF ++ +I SN
Sbjct: 891 TYKFKLEDGAEIKPRVPLLNNRIYDNKFESQYYRISDSN 929
>02_04_0195 +
20830849-20830950,20831498-20831690,20831800-20831904,
20832147-20832235,20832316-20832468,20832628-20832762,
20832849-20833015,20833519-20833613,20833707-20834080,
20834177-20834599
Length = 611
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = -3
Query: 761 VTMFKRFTAKITYKLQCVFFLFGFPH*NLMFIIFILVYICRCIT*LYFTM 612
+ M+ FT+ YK V++++GF L+F+I I+V IC I YF +
Sbjct: 458 IEMYFVFTSFWNYK---VYYVYGFML--LVFLILIIVTICVTIVGTYFLL 502
>12_01_0486 +
3854889-3855014,3855897-3856089,3856206-3856310,
3856541-3856629,3856720-3856872,3857047-3857181,
3857293-3857459,3858193-3858287,3858495-3858868,
3859101-3859374,3859464-3859531
Length = 592
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = -3
Query: 761 VTMFKRFTAKITYKLQCVFFLFGFPH*NLMFIIFILVYICRCIT*LYFTM 612
+ M+ FT+ YK V++++GF L+F+I ++V IC I YF +
Sbjct: 466 IEMYFVFTSFWNYK---VYYVYGFML--LVFVILLIVTICVTIVGTYFLL 510
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 540 KKTELKYDQDETNQNLYDEKFFEE-HRKIQSSNTSTNVYQDKNNEHQ 677
++ E++ ++E + DE+F+E R + SS +ST+ D + +H+
Sbjct: 21 ERREMEEKEEEEEEEEEDEEFYESLDRILSSSCSSTSASDDDDQQHR 67
>11_06_0037 - 19478885-19480472,19483125-19483267
Length = 576
Score = 28.3 bits (60), Expect = 8.1
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 249 AWHEDLINIQC---CCRTCLSDIAEKTCYNIFSETEESKAIRNILLCCTSI-KLKADDPL 416
A HE + IQ CC LSD E +NI S + + +I CT + +L +D L
Sbjct: 153 ASHEHIPKIQSSEYCCILQLSD--EVLAHNILSRLSP-RDVASIGSVCTRMHELTKNDHL 209
Query: 417 PKMLCESCY 443
KM+C++ +
Sbjct: 210 RKMVCQNAW 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,897,195
Number of Sequences: 37544
Number of extensions: 300823
Number of successful extensions: 728
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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