Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N21
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 118 6e-27
Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 31 1.1
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 29 4.5
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 29 4.5
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 29 4.5
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 29 4.5
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 29 4.5
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 118 bits (284), Expect = 6e-27
Identities = 66/138 (47%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Frame = +2
Query: 425 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVICTS 601
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 602 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQXTVD 781
++++ K+P+H ND+YF G +IFA+ K +Y SEQRK D TVD
Sbjct: 127 LKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVD 180
Query: 782 EAVIKAIGARPDXKVLRG 835
++ AI P+ K L G
Sbjct: 181 APILAAIKKHPEHKFLFG 198
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 161 RNYDLGNGVMRFSKSKMFHKKAKYK 235
RN+DL GV+RFS S++ KK + K
Sbjct: 12 RNFDLSPGVLRFSASRLRLKKGEKK 36
>Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical
protein C54C8.12 protein.
Length = 82
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 356 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 490
FYPT+ +A S G P + PN ++ V A RHAG R
Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 597 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 770
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 771 XQSTRL*SKPSEPDPTXRCSAGYLKA 848
+ +L S+ S + S+ +L +
Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSS 583
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 597 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 770
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 573 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 632
Query: 771 XQSTRL*SKPSEPDPTXRCSAGYLKA 848
+ +L S+ S + S+ +L +
Sbjct: 633 DINKKLISQTSRAESPLAASSSFLSS 658
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 597 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 770
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 507 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 566
Query: 771 XQSTRL*SKPSEPDPTXRCSAGYLKA 848
+ +L S+ S + S+ +L +
Sbjct: 567 DINKKLISQTSRAESPLAASSSFLSS 592
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 597 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 770
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 651 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 710
Query: 771 XQSTRL*SKPSEPDPTXRCSAGYLKA 848
+ +L S+ S + S+ +L +
Sbjct: 711 DINKKLISQTSRAESPLAASSSFLSS 736
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 597 PPPEFHSATS--NCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 770
PPP S TS NC ++ + + + SAS S R + S N + + +
Sbjct: 498 PPPPISSRTSPDNCNSSPLNVMEHKSSSASTASSGGNRRVGSAEPVLNNHHAMHNNQNHN 557
Query: 771 XQSTRL*SKPSEPDPTXRCSAGYLKA 848
+ +L S+ S + S+ +L +
Sbjct: 558 DINKKLISQTSRAESPLAASSSFLSS 583
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,514,179
Number of Sequences: 27780
Number of extensions: 408805
Number of successful extensions: 952
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -