Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N17
         (938 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       32   0.76 
07_01_0479 + 3606663-3607448                                           31   1.3  
07_03_1136 + 24218601-24218734,24218769-24219906                       31   1.7  
07_01_0080 + 587674-588510                                             29   4.0  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    29   5.3  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 18/56 (32%), Positives = 19/56 (33%)
 Frame = +3

Query: 720 PPRKXXXKXPXFXGGPPPPXXKXXPGPXPXXXPXGXLLXSXGGXRXNHKXXGNPGG 887
           PP K     P   G PPPP  K  P P P   P        GG +         GG
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 747 PXFXGGPPPPXXKXXPGPXPXXXP 818
           P F GGPPPP      GP P   P
Sbjct: 195 PAFPGGPPPPPGPFMRGPPPMGPP 218


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 558 GGXPKLXKGXXKXGXXXXPXPGGGGG 481
           GG P L  G    G    P PGGGGG
Sbjct: 115 GGPPSLPPGAGGGGGARPPAPGGGGG 140


>07_01_0080 + 587674-588510
          Length = 278

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +3

Query: 696 GGDFFLAXPPRKXXXKXPXFXGGPPPPXXKXXPGPXPXXXP 818
           GGD     PP       P   G PPPP     P P P   P
Sbjct: 83  GGDGMFRRPP--PPPPPPPSSGSPPPPPPPPPPPPPPPPPP 121


>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
            257038-257169,257297-258589,259133-259837,260465-260549,
            260604-260650,260810-260900,261838-262101,262195-262309,
            262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 747  PXFXGGPPPPXXKXXPG-PXPXXXPXGXLLXSXGGXRXNHK 866
            P   G PPPP     PG P P   P G L  +  G    H+
Sbjct: 923  PRPPGAPPPPPPPGKPGGPPPPPPPPGSLPRNLAGGDKVHR 963


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,677,890
Number of Sequences: 37544
Number of extensions: 340663
Number of successful extensions: 3465
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3243
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)