Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N17
         (938 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing f...    32   2.6  
BC051192-1|AAH51192.1|  707|Homo sapiens splicing factor proline...    32   2.6  
BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.         32   2.6  
BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.         32   2.6  
AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor proline...    32   2.6  

>X70944-1|CAA50283.1|  707|Homo sapiens PTB-associated splicing
           factor protein.
          Length = 707

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 24/70 (34%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
 Frame = +3

Query: 720 PPRKXXXKXPXFXGGPPPPXX-KXXPGPXPXXXPXGXLLXSXGGXRXNHKXXGNPG-GXX 893
           PP       P   GGPPPP      PGP P   P G      G      K  G PG    
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGP-GPGGPKGGKMPGGPKPGGGPGLSTP 227

Query: 894 XGXFGPPXXG 923
            G   PP  G
Sbjct: 228 GGHPKPPHRG 237


>BC051192-1|AAH51192.1|  707|Homo sapiens splicing factor
           proline/glutamine-rich (polypyrimidine tract binding
           protein as protein.
          Length = 707

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 24/70 (34%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
 Frame = +3

Query: 720 PPRKXXXKXPXFXGGPPPPXX-KXXPGPXPXXXPXGXLLXSXGGXRXNHKXXGNPG-GXX 893
           PP       P   GGPPPP      PGP P   P G      G      K  G PG    
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGP-GPGGPKGGKMPGGPKPGGGPGLSTP 227

Query: 894 XGXFGPPXXG 923
            G   PP  G
Sbjct: 228 GGHPKPPRRG 237


>BC027708-1|AAH27708.1|  525|Homo sapiens SFPQ protein protein.
          Length = 525

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 24/70 (34%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
 Frame = +3

Query: 720 PPRKXXXKXPXFXGGPPPPXX-KXXPGPXPXXXPXGXLLXSXGGXRXNHKXXGNPG-GXX 893
           PP       P   GGPPPP      PGP P   P G      G      K  G PG    
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGP-GPGGPKGGKMPGGPKPGGGPGLSTP 227

Query: 894 XGXFGPPXXG 923
            G   PP  G
Sbjct: 228 GGHPKPPHRG 237


>BC004534-1|AAH04534.2|  634|Homo sapiens SFPQ protein protein.
          Length = 634

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 24/70 (34%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
 Frame = +3

Query: 720 PPRKXXXKXPXFXGGPPPPXX-KXXPGPXPXXXPXGXLLXSXGGXRXNHKXXGNPG-GXX 893
           PP       P   GGPPPP      PGP P   P G      G      K  G PG    
Sbjct: 96  PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGP-GPGGPKGGKMPGGPKPGGGPGLSTP 154

Query: 894 XGXFGPPXXG 923
            G   PP  G
Sbjct: 155 GGHPKPPHRG 164


>AL590434-2|CAI12467.1|  707|Homo sapiens splicing factor
           proline/glutamine-rich (polypyrimidine tract binding
           protein as protein.
          Length = 707

 Score = 32.3 bits (70), Expect = 2.6
 Identities = 24/70 (34%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
 Frame = +3

Query: 720 PPRKXXXKXPXFXGGPPPPXX-KXXPGPXPXXXPXGXLLXSXGGXRXNHKXXGNPG-GXX 893
           PP       P   GGPPPP      PGP P   P G      G      K  G PG    
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGP-GPGGPKGGKMPGGPKPGGGPGLSTP 227

Query: 894 XGXFGPPXXG 923
            G   PP  G
Sbjct: 228 GGHPKPPHRG 237


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,301,067
Number of Sequences: 237096
Number of extensions: 1846867
Number of successful extensions: 10483
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9475
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12325533684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)