Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N15
(925 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.30
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.40
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 8.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 813 TPXXXP-PFXPPRXKKXXPPPXPPPXXGGGXXLKPP 917
TP P P PP PPP PPP G PP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 29.9 bits (64), Expect = 0.53
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 480 PPPPXXXGXFFXGPXPXPPXKXPAPRXXGGGGXXPPP 590
PPPP G GP P PP P P GG P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAP 795
Score = 29.5 bits (63), Expect = 0.70
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 474 KXPPPPXXXGXFFXGPXPXP-PXKXPAPRXXGGGGXXPPPXG 596
K PPPP P P P P PAP GG PPP G
Sbjct: 730 KSPPPPPP-AVIVPTPAPAPIPVPPPAP-IMGGPPPPPPPPG 769
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 804 PQKTPXXXPPFXPPRXKKXXPPPXPPPXXGGGXXLKPP 917
P P PP P PPP PPP G PP
Sbjct: 744 PAPAPIPVPP--PAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = +1
Query: 760 GGPPPPNXK--XXGXSPPKKPPXXP 828
GGPPPP G PP PP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 828 PPFXPPRXKKXXPPPXPPP 884
PP PP PPP PPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 769 PPPNXKXXGXSPPKKPPXXPXLFXPPXXKKXXXPPXPPRXXXG 897
PPP G PP PP PP PP PP G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP------PPPPPPAVSAG 788
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.40
Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Frame = +3
Query: 804 PQKTPXXXPPFXPPRXKKXXPPPXPPPXXG--GGXXLKPPR 920
P P PP P PPP PPP G PPR
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPR 273
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 801 PPQKTPXXXPPFXPPRXKKXXPPPXPPPXXGGGXXLKPP 917
PP TP PP PP PP PP G PP
Sbjct: 415 PPVPTPPSLPPSAPPSL-----PPSAPPSLPMGAPAAPP 448
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/39 (28%), Positives = 13/39 (33%)
Frame = +3
Query: 801 PPQKTPXXXPPFXPPRXKKXXPPPXPPPXXGGGXXLKPP 917
PP + PP PPP PPP + P
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Frame = +3
Query: 480 PPPPXXXGXFFXGPXPXPPX-----KXPAPRXXGGGGXXPPP 590
PPPP G P PP P PR G PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 816 PXXXPPFXPPRXKKXXPPPXPPPXXGGGXXLKPP 917
P P PP PPP PP G PP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 763 GPPPPNXKXXGXSPPKKPPXXP 828
G PPP G PP +PP P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Frame = +3
Query: 801 PPQKTPXXXPP--FXPPRXKKXXPPPXPPP 884
PP P PP F PP PPP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPP----SQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/51 (25%), Positives = 16/51 (31%)
Frame = +3
Query: 519 PXPXPPXKXPAPRXXGGGGXXPPPXGGXXXXPXXGGXPXKKIFXKRXPXXP 671
P P P P P+ G PPP G P + + P P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,816
Number of Sequences: 5004
Number of extensions: 16960
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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