Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N14
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    28   1.5  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    28   2.0  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   2.7  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   8.1  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   8.1  

>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 120 SVVFYIILVVQARTSIP*INMADQNQQAGDTGPPKGIPALKAHIIANKID 269
           ++ FY+     AR  I      +  Q+ G  GP KG  A+K H I  +ID
Sbjct: 307 NIPFYV--TSDARDIINKFLKKNPKQRLGADGPEKGYDAIKKHRIYRRID 354


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 266 YFIGNDVSFQGWDAFGWTSVAC 201
           Y  GN  ++ GW   GW+ + C
Sbjct: 231 YIFGNFENYSGWTNMGWSFILC 252


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 429 SLSREFMARFFLEDSAHYLFYSLIFMNVVPNLL 527
           S S+E +A FF+ D   YLFY+L F+  VP ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 501 FMNVVPNLLILVPIFLFALLHAASYSL 581
           F+ V+PN+ +L+P F+   +  + Y L
Sbjct: 103 FLTVIPNIAVLIPCFIAYKITDSHYLL 129


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 269 RSSLGGPRNHRAVYHWIR 322
           R  LG  R HRA  HWI+
Sbjct: 363 RDLLGDERVHRAAMHWIK 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,136
Number of Sequences: 5004
Number of extensions: 67397
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)