Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N14
(875 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical... 93 3e-19
Z70753-3|CAA94768.1| 343|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z37092-8|CAA85460.2| 327|Caenorhabditis elegans Hypothetical pr... 29 3.3
AY037792-1|AAK94756.1| 327|Caenorhabditis elegans SRA-12 protein. 29 3.3
AL021503-2|CAA16421.1| 320|Caenorhabditis elegans Hypothetical ... 29 4.4
AF016442-4|AAB65915.1| 361|Caenorhabditis elegans Serpentine re... 29 4.4
Z81047-8|CAB02830.2| 323|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 5.8
U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic glut... 29 5.8
L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate recep... 29 5.8
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr... 28 7.6
AL023858-1|CAA19568.2| 328|Caenorhabditis elegans Hypothetical ... 28 7.6
AF016415-4|AAW88419.1| 298|Caenorhabditis elegans Serpentine re... 28 7.6
>AL032626-27|CAA21541.1| 271|Caenorhabditis elegans Hypothetical
protein Y37D8A.17 protein.
Length = 271
Score = 92.7 bits (220), Expect = 3e-19
Identities = 45/122 (36%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Frame = +3
Query: 216 PPKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFNN-PV-SAFYKALLANAATS 389
PP ++ ++ AN ++ L+ RV+TV + Y+ P P SA+YK A+AAT
Sbjct: 31 PPPAYSSISQYVSANTMECVLFAARVLTVFFALNYMIPFIGLVPAHSAYYKIFAASAATF 90
Query: 390 ALRLHQRIPAREISLSREFMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAA 569
ALRLH RI + +L+ +F+ R +EDS HYL YS++F+ P + +P+ ++A LHA
Sbjct: 91 ALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIYAALHAC 149
Query: 570 SY 575
++
Sbjct: 150 TF 151
Score = 46.0 bits (104), Expect = 4e-05
Identities = 29/86 (33%), Positives = 42/86 (48%)
Frame = +2
Query: 548 ICAATRCFVFLGLSLDTLGQNSLWVARLLISLVEFQSRNILRAAALAEIVLSRVVLIMAL 727
I AA F+ L G S + +L Q++N L A +EI L +++ +
Sbjct: 142 IYAALHACTFMTKILRETGHTSSIIPKLE-QFTAHQTQNALGIIACSEIFLVPLLVSLIF 200
Query: 728 FGHCGLMSPFVYYYFVTWRYASRXNP 805
G L+ PF YY F++ RYASR NP
Sbjct: 201 SGKGSLLLPFAYYRFLSLRYASRRNP 226
>Z70753-3|CAA94768.1| 343|Caenorhabditis elegans Hypothetical
protein F40F9.4 protein.
Length = 343
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 483 LFYSLIFMNVVPNLLILVPIFLFALLHAASYSLDY 587
LFYSL+ ++P +L+ +PI ++ L LD+
Sbjct: 241 LFYSLVLQTLIPFVLMHIPITIYYLCPMLDMDLDF 275
>Z37092-8|CAA85460.2| 327|Caenorhabditis elegans Hypothetical
protein F44F4.7 protein.
Length = 327
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +2
Query: 551 CAATRCFVFLGLSLDTLGQNSLWVARLLISLVEFQSRNILRAAALAEIVLSRVVLIMALF 730
C T + +G+S + L Q++L + RLL ++ F + R AL VL +VLI A+F
Sbjct: 98 CIPTTTVLAMGISGNMLIQSALSIDRLLATIFPF---SYSRMRALPGFVLLIMVLIPAMF 154
>AY037792-1|AAK94756.1| 327|Caenorhabditis elegans SRA-12 protein.
Length = 327
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +2
Query: 551 CAATRCFVFLGLSLDTLGQNSLWVARLLISLVEFQSRNILRAAALAEIVLSRVVLIMALF 730
C T + +G+S + L Q++L + RLL ++ F + R AL VL +VLI A+F
Sbjct: 98 CIPTTTVLAMGISGNMLIQSALSIDRLLATIFPF---SYSRMRALPGFVLLIMVLIPAMF 154
>AL021503-2|CAA16421.1| 320|Caenorhabditis elegans Hypothetical
protein Y68A4A.3 protein.
Length = 320
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 483 LFYSLIFMNVVPNLLILVP---IFLFALLHAASYSLDYP 590
LFYSLIF + +P LL+ +P IF+ + + +++P
Sbjct: 239 LFYSLIFQSAIPCLLMYLPAGTIFMITMFD-LGFDMEFP 276
>AF016442-4|AAB65915.1| 361|Caenorhabditis elegans Serpentine
receptor, class n protein1 protein.
Length = 361
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 468 DSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLD 584
++ +L +F N++P ++I P+FL A SY D
Sbjct: 247 ETHRHLTLLALFQNLIPAVVIAFPVFLVAFSFVMSYESD 285
>Z81047-8|CAB02830.2| 323|Caenorhabditis elegans Hypothetical
protein C41G6.10 protein.
Length = 323
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 65 SSVPNCQYHVLCRDFIYYFSSILYNFSCSSTNF 163
SSVPN YHVL ++ S+ + S SS ++
Sbjct: 128 SSVPNWIYHVLLGMIVFLIWSLTFTLSMSSESY 160
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 173 NQHGRSKSASRRHWSTQRHPSLESSHHCQ*NRRSSLGGPR 292
+ +GR ++SRR + Q+ PS S+ H N R+SL P+
Sbjct: 161 DNYGREPASSRRPYPPQQPPS-TSAPHSSPNNRTSLYNPQ 199
>U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic
glutamate receptor subunitprotein.
Length = 962
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 77 NCQYHVLCRDFIYYFSSILYNFSCSSTNFNTLNQHGRSKSASRRHWSTQRHPSLESS 247
N Y + DF+ Y + N + + + FN +N+ G R +WS ++H SS
Sbjct: 251 NYHYVLANYDFLPYDQEMFQNGNINISGFNIINKDG------REYWSLKKHLKTSSS 301
>L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 1 protein.
Length = 962
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 77 NCQYHVLCRDFIYYFSSILYNFSCSSTNFNTLNQHGRSKSASRRHWSTQRHPSLESS 247
N Y + DF+ Y + N + + + FN +N+ G R +WS ++H SS
Sbjct: 251 NYHYVLANYDFLPYDQEMFQNGNINISGFNIINKDG------REYWSLKKHLKTSSS 301
>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
W02C12.1 protein.
Length = 1372
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 640 PGRVPVAEHSPGRGACRDRAVPGRTYNGI 726
PG++ +E + G C+D PG Y+ +
Sbjct: 971 PGQITASEGAISEGECKDNCPPGHQYDSL 999
>AL023858-1|CAA19568.2| 328|Caenorhabditis elegans Hypothetical
protein ZK285.1 protein.
Length = 328
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 483 LFYSLIFMNVVPNLLILVP--IFLFALLHAASYSLDYP 590
LFYSLIF +P +L+ +P I L + ++L+ P
Sbjct: 247 LFYSLIFQTAIPCVLMYLPAGIILSVPMFNVGFNLEVP 284
>AF016415-4|AAW88419.1| 298|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 31 protein.
Length = 298
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 45 FFD*FSVHRYLIVSTTFCVAILSIISVVFY 134
FF F +HR ++ S CV+I+ + ++F+
Sbjct: 170 FFSYFMLHRCIVFSINICVSIVLSVKLLFW 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,098,694
Number of Sequences: 27780
Number of extensions: 400147
Number of successful extensions: 1406
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -