Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N13
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0300 - 16401011-16401435,16401692-16401743                       32   0.71 

>07_03_0300 - 16401011-16401435,16401692-16401743
          Length = 158

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 263 GHVARRDTTNVERL-VVNGKIEGR-SRCGGPKQWSDQIAEELKI---PVSDALHQATERD 427
           G   RR    V+R  VV G  +G   R  GP+Q  D +A +  I   P   ALHQ   R 
Sbjct: 40  GGAERRGVVEVQRRRVVEGGSDGLLPRFQGPEQ-PDPLAGDQTIDGPPTDLALHQEGRRR 98

Query: 428 RWRQL 442
           RWR+L
Sbjct: 99  RWRRL 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,609,961
Number of Sequences: 37544
Number of extensions: 410387
Number of successful extensions: 922
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)