Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N12
(994 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 35 0.088
11_01_0385 + 2915532-2916482 31 1.1
03_01_0515 - 3864796-3865425 31 1.1
05_01_0142 - 940421-940701,941262-941574 30 2.5
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 30 2.5
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 3.3
07_01_0479 + 3606663-3607448 29 4.4
01_07_0082 - 40965947-40967023 29 5.8
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 29 7.6
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 35.1 bits (77), Expect = 0.088
Identities = 23/70 (32%), Positives = 23/70 (32%)
Frame = -1
Query: 643 PXXXPGGXPXVPPGPXXPXXGGXXXPARGGXXXGXRDRXGXXPXXPXAXXXXPPIPXXPX 464
P PGG VPP P GG P G G P P PP P P
Sbjct: 1111 PPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGI---GGVPPPPPVGGLGGPPAP--PP 1165
Query: 463 PXGXAGXXXP 434
P G G P
Sbjct: 1166 PAGFRGGTPP 1175
>11_01_0385 + 2915532-2916482
Length = 316
Score = 31.5 bits (68), Expect = 1.1
Identities = 24/95 (25%), Positives = 25/95 (26%)
Frame = -1
Query: 652 PXGPXXXPGGXPXVPPGPXXPXXGGXXXPARGGXXXGXRDRXGXXPXXPXAXXXXPPIPX 473
P P P P P P P GG R G P PP P
Sbjct: 133 PDQPELSPPAPPPESYTPDAPPAPEAASPHHGGGENPAWPRPGNNQWPPLPPFNQPPTPE 192
Query: 472 XPXPXGXAGXXXPXXPXTRXPGTXGLAVVXXXEWP 368
P P G P P P T +WP
Sbjct: 193 WPHP----GNKWPPLPPFHPPPTPAWPHPGGNKWP 223
>03_01_0515 - 3864796-3865425
Length = 209
Score = 31.5 bits (68), Expect = 1.1
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = -3
Query: 653 AXGPXPXXGXXPXXXPXXXXPPPXGXRXXXXGGXGXGXAGPXXRXPXXPPXGXXXSPHPA 474
A P P P P PPP AGP P PP P P
Sbjct: 28 APAPSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPP 87
Query: 473 XPXSP 459
P P
Sbjct: 88 LPPPP 92
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 507 GXXGXXPXRSRXPXXXPPRAGXXXPPXXGXXGPGGTXGXPPG 632
G G P + P PP G PP P G PPG
Sbjct: 25 GGHGYPPHQGYPPQGYPPPPGAYPPPPGAYPPPPGAYPPPPG 66
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 30.3 bits (65), Expect = 2.5
Identities = 20/68 (29%), Positives = 20/68 (29%)
Frame = -3
Query: 734 PGAXXXGXXXGXXAGRGPXXRXXXPGXAXGPXPXXGXXPXXXPXXXXPPPXGXRXXXXGG 555
PG G G P G GP P G P P G R GG
Sbjct: 426 PGGPNRYPQGGNQGGYNPNRGGQGGGYGSGPYPQQGRGPPPYPGGGMGGAGGPR--GGGG 483
Query: 554 XGXGXAGP 531
G G GP
Sbjct: 484 SGYGVGGP 491
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 3.3
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 555 PPRAGXXXPPXXGXXGPGGTXGXPPGXXXGP 647
PP G PP G G GG PP GP
Sbjct: 363 PPGPGPGPPPPPGAAGRGGGGPPPPALPGGP 393
Score = 29.1 bits (62), Expect = 5.8
Identities = 19/76 (25%), Positives = 19/76 (25%)
Frame = -3
Query: 683 PXXRXXXPGXAXGPXPXXGXXPXXXPXXXXPPPXGXRXXXXGGXGXGXAGPXXRXPXXPP 504
P PG G P P PPP G G P P P
Sbjct: 303 PPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPA---PSPSAAGAGSGPPPPPPPAAPA 359
Query: 503 XGXXXSPHPAXPXSPG 456
P P P PG
Sbjct: 360 APRPPGPGPGPPPPPG 375
Score = 29.1 bits (62), Expect = 5.8
Identities = 22/83 (26%), Positives = 23/83 (27%), Gaps = 1/83 (1%)
Frame = -1
Query: 652 PXGPXXXPG-GXPXVPPGPXXPXXGGXXXPARGGXXXGXRDRXGXXPXXPXAXXXXPPIP 476
P G G G P PP P+ G P P A P P
Sbjct: 309 PPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGP 368
Query: 475 XXPXPXGXAGXXXPXXPXTRXPG 407
P P G AG P PG
Sbjct: 369 GPPPPPGAAGRGGGGPPPPALPG 391
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.5 bits (63), Expect = 4.4
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = -3
Query: 629 GXXPXXXPXXXXPPPXGXRXXXXGGXGXGXAGPXXRXPXXPPXGXXXSPHPAXPXSPG 456
G P P PPP G G G G P PP P P P PG
Sbjct: 200 GPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMP-PPPFRPGMPPPPPGPQQPG 256
>01_07_0082 - 40965947-40967023
Length = 358
Score = 29.1 bits (62), Expect = 5.8
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 555 PPRAGXXXPPXXGXXGPGGTXGXPPGXXXG 644
PP+AG PP G GG G PP G
Sbjct: 270 PPQAGYGYPPPPPQAGYGGGYGYPPQAGYG 299
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 28.7 bits (61), Expect = 7.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 482 GGXGGXRXGGXGXXAXXVPXPXXXPPP 562
GG GG R GG P P PPP
Sbjct: 45 GGGGGDRRGGFQLPPDAAPPPPPPPPP 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,013,541
Number of Sequences: 37544
Number of extensions: 207509
Number of successful extensions: 545
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2905255520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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