Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N11
(990 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 38 0.016
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 33 0.35
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 31 1.1
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 31 1.4
08_01_0059 - 394001-394708 31 1.4
05_07_0282 + 28934359-28936458 31 1.4
01_01_0070 - 542603-542686,542803-543441 31 1.4
04_03_0904 + 20717005-20718087 29 5.7
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 5.7
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 5.7
11_06_0610 - 25449085-25453284 29 7.6
>12_02_1174 - 26696869-26698191
Length = 440
Score = 37.5 bits (83), Expect = 0.016
Identities = 25/83 (30%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Frame = +3
Query: 702 P*PTXPEXXXRSPXRLXXPXXPXTXNXXAVSPPXXXPIX--PPXRSHPXXXEPPPXXXXL 875
P P P+ P P P +V PP P PP P PPP
Sbjct: 141 PPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPS 200
Query: 876 XXXXXXXPKXFXPXPTLPPAXXP 944
PK P PTLPP P
Sbjct: 201 VKPPVVQPKP-QPPPTLPPPSPP 222
Score = 29.5 bits (63), Expect = 4.3
Identities = 16/59 (27%), Positives = 18/59 (30%)
Frame = +3
Query: 756 PXXPXTXNXXAVSPPXXXPIXPPXRSHPXXXEPPPXXXXLXXXXXXXPKXFXPXPTLPP 932
P P +V PP P P + P PPP P P P PP
Sbjct: 190 PPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDTPAVVEPKPQPPP 248
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 33.1 bits (72), Expect = 0.35
Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Frame = +3
Query: 717 PEXXXRSPXRLXXPXXPXTXNXXAVSPPXXXPIXPP---XRSHPXXXEPPPXXXXLXXXX 887
P +P P P + N A SPP P PP +S+ +PPP
Sbjct: 537 PSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPN 596
Query: 888 XXXPKXFXPXPTLPPAXXPSSXIXXXXXXAPXQP 989
P P P PP P+ + P P
Sbjct: 597 CLVPS--PPPPPPPPPILPNRSVPPPPPPPPPLP 628
Score = 33.1 bits (72), Expect = 0.35
Identities = 25/83 (30%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Frame = +3
Query: 702 P*PTXPEXXXRSPXRLXXPXXPXTXNXXAVSPPXXXPIXP--PXRSHPXXXEPPPXXXXL 875
P P P+ S P P N SPP P P P RS P PPP
Sbjct: 571 PPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNH 630
Query: 876 XXXXXXXPKXFXPXPTLPPAXXP 944
P P P+LP P
Sbjct: 631 SVLPPPPPPP--PPPSLPNRLVP 651
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 31.5 bits (68), Expect = 1.1
Identities = 25/89 (28%), Positives = 30/89 (33%)
Frame = +3
Query: 684 PLXSXXP*PTXPEXXXRSPXRLXXPXXPXTXNXXAVSPPXXXPIXPPXRSHPXXXEPPPX 863
PL + P P PE P P + +PP P+ P S P PPP
Sbjct: 1133 PLDAPPP-PPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSP---SLPPPPPPPPL 1188
Query: 864 XXXLXXXXXXXPKXFXPXPTLPPAXXPSS 950
P P P +PP PSS
Sbjct: 1189 PSGPPPQPAPPPLPIQP-PPIPPPPVPSS 1216
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 31.1 bits (67), Expect = 1.4
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Frame = +3
Query: 708 PTXPEXXXRSPXRLXXPXXPXTXNXXAVSP-PXXXPIXPPXRSHPXXXEPPPXXXXLXXX 884
P+ P +P + P P T V+P P P+ PP P PPP +
Sbjct: 33 PSLPTTTPPAPT-VVAPPLPTTPPPAVVAPSPPLPPLTPPPAIVPPALPPPPPLPAIVVP 91
Query: 885 XXXXPKXFXPXPTLPPAXXP 944
P P +PPA P
Sbjct: 92 PALPP---TPAIAVPPALPP 108
>08_01_0059 - 394001-394708
Length = 235
Score = 31.1 bits (67), Expect = 1.4
Identities = 20/69 (28%), Positives = 20/69 (28%)
Frame = +3
Query: 738 PXRLXXPXXPXTXNXXAVSPPXXXPIXPPXRSHPXXXEPPPXXXXLXXXXXXXPKXFXPX 917
P R P PP PI PP P PPP L P P
Sbjct: 7 PRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPL---APPPPHISPPA 63
Query: 918 PTLPPAXXP 944
P PP P
Sbjct: 64 PVPPPPSPP 72
>05_07_0282 + 28934359-28936458
Length = 699
Score = 31.1 bits (67), Expect = 1.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 135 PP*XASSXXSGDXLRRPDGGLRASAILIVKGFHXQRRGGGXTRL 4
PP D L P G L +++L++ FH +RR GG L
Sbjct: 207 PPLTRQEHRLADLLAAPRGKLHPASVLLMSDFHMRRRLGGNGNL 250
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 31.1 bits (67), Expect = 1.4
Identities = 22/88 (25%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Frame = +3
Query: 702 P*PTXPEXXXRSPXRLXXPXXPXTXNXXAVSPPXXXPIXP-------PXRSHPXXXEPPP 860
P PT P +P P A +PP + P P ++ P PPP
Sbjct: 40 PVPTAPAKSPPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPPPPTPKKAPPPPVTPPP 99
Query: 861 XXXXLXXXXXXXPKXFXPXPTLPPAXXP 944
P P P LPP+ P
Sbjct: 100 VTPPPVTPPPVSPPPATPPPALPPSTPP 127
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.1 bits (62), Expect = 5.7
Identities = 18/75 (24%), Positives = 21/75 (28%)
Frame = +3
Query: 765 PXTXNXXAVSPPXXXPIXPPXRSHPXXXEPPPXXXXLXXXXXXXPKXFXPXPTLPPAXXP 944
P A +PP P P P PP P + P PT P P
Sbjct: 65 PKEHKPPAYTPPKPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPP 124
Query: 945 SSXIXXXXXXAPXQP 989
+ AP P
Sbjct: 125 TYKPQPKPTPAPYTP 139
Score = 28.7 bits (61), Expect = 7.6
Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Frame = +3
Query: 702 P*PTXPEXXXRSPXRLXXPXXPX-TXNXXAVSPPXXXPIXPPXRSHPXXXEPPPXXXXLX 878
P PT P +P P P T +PP P P + P +P P
Sbjct: 78 PTPTPPTYTP-TPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAP 136
Query: 879 XXXXXXPKXF--XPXPTLPPAXXP 944
P + P PT PP P
Sbjct: 137 YTPTPTPPTYKPQPKPTPPPTYKP 160
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.1 bits (62), Expect = 5.7
Identities = 21/78 (26%), Positives = 26/78 (33%)
Frame = +3
Query: 717 PEXXXRSPXRLXXPXXPXTXNXXAVSPPXXXPIXPPXRSHPXXXEPPPXXXXLXXXXXXX 896
P R+P R T + V+ P P+ P P PPP
Sbjct: 312 PARSRRTPPRTRFSTGS-TPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPPPPPKLNTA 370
Query: 897 PKXFXPXPTLPPAXXPSS 950
PK P P PP PS+
Sbjct: 371 PK--PPPPPPPPPSVPSN 386
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.1 bits (62), Expect = 5.7
Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Frame = +3
Query: 702 P*PTXPEXXXRSPXRLXXPXXPXTXNXXAV------SPPXXXPIXPPXRSHPXXXEP--- 854
P P P S P P T A+ PP P+ PP R +P
Sbjct: 205 PSPEHPPRHSPSKPPAYAPAKPPTALRPAIPPAAMPKPPSVAPVQPPQRPPAPATKPPPS 264
Query: 855 -PPXXXXLXXXXXXXPKXFXPXPTLPPAXXPSS 950
PP P PT PPA P++
Sbjct: 265 FPPQLAPTMPPPAHAPAETPAPPTTPPALPPAT 297
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 7.6
Identities = 20/78 (25%), Positives = 22/78 (28%)
Frame = +3
Query: 717 PEXXXRSPXRLXXPXXPXTXNXXAVSPPXXXPIXPPXRSHPXXXEPPPXXXXLXXXXXXX 896
P SP P P T + +P P PP S P PPP
Sbjct: 737 PSPPKSSPPEEKSPPIPPTSHTSPPTPEEYTP-SPPKSSPPEEKSPPPHSPEKSPPSEAH 795
Query: 897 PKXFXPXPTLPPAXXPSS 950
P P PP S
Sbjct: 796 PTSPPPSEKSPPTPAEES 813
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,386,208
Number of Sequences: 37544
Number of extensions: 222230
Number of successful extensions: 692
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2893540780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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