Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N11
         (990 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   6.8  
AF003140-8|AAB54169.1|  396|Caenorhabditis elegans Hypothetical ...    29   6.8  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +3

Query: 684 PLXSXXP*PTXPEXXXRSPXRLXXPXXPXTXNXXAVSPPXXXPIXPPXRSHPXXXEPPP 860
           P  S    PT P+     P R+  P         + SPP   P+ PP  +      PPP
Sbjct: 459 PSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPL-PPIATPSSVPPPPP 516


>AF003140-8|AAB54169.1|  396|Caenorhabditis elegans Hypothetical
           protein C44E4.4 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 860 GGRFGXXRVGAXGGXDGXXXRGGDRXXIXSXGXXGXSQP 744
           GGR G    G  GG  G   R GD+      G  G  +P
Sbjct: 339 GGRGGRGGRGGRGGRGGRGDRRGDKRSANDEGADGSDEP 377


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +3

Query: 765 PXTXNXXAVSPPXXXPIXPPXRSHPXXXEPPPXXXXLXXXXXXXPKXFXPXPTLPP 932
           P T       P    P   P R+ P   EPPP            P    P  T PP
Sbjct: 373 PRTEPPKTEPPTTEPPKIEPPRTEPPKTEPPPTEPPKTEPPKTTPPKTEPPTTEPP 428


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = +3

Query: 708 PTXPEXXXRSPXRLXXPXXPXTXNXXAVSPPXXXPIXPPXRSHPXXXEPPP 860
           PT P+     P R+  P         + SPP   P+ PP  +      PPP
Sbjct: 460 PTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPL-PPIATPSSVPPPPP 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,344,074
Number of Sequences: 27780
Number of extensions: 138223
Number of successful extensions: 279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2584172786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)