Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N10
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 30 0.48
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 28 1.5
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 28 1.9
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.4
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 4.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 4.5
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.9
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 5.9
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 26 5.9
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 26 7.8
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ... 26 7.8
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 26 7.8
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 29.9 bits (64), Expect = 0.48
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +2
Query: 482 SRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESALK-QQNQP 658
S RPT A P+D+ S + SA P + T + +T++ AL+ Q
Sbjct: 593 SSRPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPESSTNEATSVGPALEPSQGAN 652
Query: 659 LDKKRKLDSNKSGAPKKKHETGS 727
+ K N++ + K +T +
Sbjct: 653 VHKSDSELDNQNQSGKSNPDTSA 675
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -2
Query: 491 GADSQPDVFYLAFCTWPIYVRLTHWCFRLTILNLTL--PPTHLMWTLRRGRNSVVQ 330
G D QP F WP Y+RL R ILNL L PP + +N+ Q
Sbjct: 37 GQDIQPKRDLSRFVKWPEYIRLQR---RRKILNLRLKVPPAIAQFQKTLDKNTATQ 89
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 518 DILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESALKQQNQPL--DKKRKLDSNK 691
D + + + +A+ ++ +T +P ++TN+T + +A +N L DK++ +++
Sbjct: 694 DFMKASVERAASSRVFSTGTSVT-SPQALSKTNNT-VNNAANTENNTLAKDKQQTSEASS 751
Query: 692 SGAPKKKHETG 724
G P++ TG
Sbjct: 752 PGTPRELKTTG 762
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.1 bits (57), Expect = 3.4
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Frame = +2
Query: 440 LAMYKMQDKKRPAAS----RRPTDK---AGEPIDILSSDEDGSAAPKLPKINDQITITPH 598
L ++K DK+R A +P ++ E D + D A ++ DQ +
Sbjct: 1389 LVLFKKLDKERAATDIYGKGKPLERLLTVNELPDFYKVEVDSFAVQSSSELEDQY-LERK 1447
Query: 599 IPARTNSTAIESALKQQNQPLDKKRKLDSNKSGAPKKKHETGSA 730
R + + E L + N D L K G P+KK +GS+
Sbjct: 1448 RRRRNSISYTELTLDELNTVDDPSSTLMPRKRGRPRKKTNSGSS 1491
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 564 GNLGAALPSSSLLKMSIGS 508
GNL A P S LLK+++GS
Sbjct: 201 GNLNARRPQSGLLKITVGS 219
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 728 AKMVKIGFXDIGGLSDIIMQICDLIL 805
A + F IGGL DII+Q+ ++++
Sbjct: 364 ANRENLDFNSIGGLEDIILQLKEMVM 389
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 5.9
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +2
Query: 494 TDKAGEPIDILSSDE--DGSAAPKLPKI----NDQITITPHIPARTNSTAIESALKQQNQ 655
T EPID + ++ D S P P N+ + +P A T+ + S +Q
Sbjct: 336 TQTVEEPIDTKAGEKLTDSSKQPSPPVAEHFSNETFSASPK-GAETDVKSEGSNNHEQGS 394
Query: 656 PLDKKRKLDSNKSGAPKKKHETGSAK 733
+ K +DSN S +PK+ S +
Sbjct: 395 FNEPKSNVDSNDSASPKRPSSQASLR 420
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/90 (22%), Positives = 39/90 (43%)
Frame = +2
Query: 452 KMQDKKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIE 631
K + + A+ + D + +D LS DE+ S + + K + + + S A++
Sbjct: 112 KNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSKD----DGSEALD 167
Query: 632 SALKQQNQPLDKKRKLDSNKSGAPKKKHET 721
+ ++ KK+K APKK +T
Sbjct: 168 DGDIESSEKDKKKKKKSKENDDAPKKDRKT 197
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 668 KRKLDSNKSGAPKKKH 715
K+KLDS KSG +KKH
Sbjct: 10 KKKLDSAKSGRVEKKH 25
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 608 RTNSTAIESALKQQNQPLDKKRKLDSNKSGAPKKKH 715
R NST +SA K NQP++K +K A +K++
Sbjct: 166 RGNSTINKSAQKLNNQPIEKS---SVDKENAKRKRY 198
>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 725 SAKMVKIGFXDIGGLSDIIMQICDLILHMKL 817
S+K+V IGF D+ GLS I + D + + +L
Sbjct: 39 SSKVVLIGFMDVFGLSKQIKEGADQLANHEL 69
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 464 KKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLPK---INDQITITPHIPARTNSTAI 628
KKR S PT + P++I + D L K ND+ + P AR + T++
Sbjct: 671 KKRVRFSEVPTTSSVPPVEIKNKDSKPKVEKSLDKHNMNNDRSFLVPSRDARNSLTSL 728
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,377
Number of Sequences: 5004
Number of extensions: 65011
Number of successful extensions: 239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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