Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N10
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 32 0.67
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697... 31 0.88
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 30 2.7
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 29 4.7
03_03_0048 + 14065317-14065433,14065646-14065726,14066566-140669... 29 6.2
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 8.2
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 31.9 bits (69), Expect = 0.67
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 133 LHFQEISSQYLFVKRLNFHNGQNAMFSFFKILRNS 29
L F +IS YLF+ RLN HN + +++L +S
Sbjct: 576 LEFSDISCCYLFISRLNKHNAIFEVVDIWRLLESS 610
>01_01_0886 -
6970112-6970225,6970357-6970473,6970567-6970635,
6970711-6970849,6970964-6971532,6971799-6971966,
6972097-6972184,6972260-6972818,6972924-6973024,
6973113-6973155,6973845-6973938,6974160-6974215,
6974460-6974581,6975306-6975517
Length = 816
Score = 31.5 bits (68), Expect = 0.88
Identities = 24/116 (20%), Positives = 45/116 (38%)
Frame = +2
Query: 458 QDKKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESA 637
+D + A R + A I ++ + A LP + P + ++ E
Sbjct: 412 KDSMKLEAKRDASKVADRGIAPFAAKSETKPATLLPPVPPTAAAAPPVESKAEPEKFEK- 470
Query: 638 LKQQNQPLDKKRKLDSNKSGAPKKKHETGSAKMVKIGFXDIGGLSDIIMQICDLIL 805
K P K ++ + + + E A + + F DIG LSDI + +L++
Sbjct: 471 -KDNPSPAAKAPEMPPDNEFEKRIRPEVIPANEIGVTFDDIGALSDIKESLQELVM 525
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 718 LMFFLWCSTFIAVKLTFFIKWLVLLFECTLNRRAVSS 608
L F + C + ++ FF W V++ CT++ A S
Sbjct: 424 LQFLVCCCCYGHIQFVFFSSWFVVVMACTMSSMACHS 460
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 602 PARTNSTAIESALKQQNQPLDKKRKLDSNKSGAPKKKHETGSAKMVK 742
P+ N A+ + K+Q++ + K+R K PK+ + +AK+ K
Sbjct: 431 PSTQNEVAVRLSKKEQDRKIMKQRDKGKKKEALPKEDKDQVAAKVQK 477
>03_03_0048 +
14065317-14065433,14065646-14065726,14066566-14066967,
14067131-14067199,14067278-14067360,14067503-14067555,
14067659-14067780,14068033-14068386,14068479-14068578,
14068663-14068895
Length = 537
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +2
Query: 170 PVIVSRVKNYLAENVDKTFVDVSQMARSLKERYREYNNRSDTAFCQMVEAAYKVVLQS 343
P + ++ + + +N + + R L+E Y+E+NN + ++ ++E Y + L S
Sbjct: 423 PTMADQLSSQVDQNSVQVNAKLEATKRMLQEGYQEFNNDTKSSTSALIETYYFLNLDS 480
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 28.3 bits (60), Expect = 8.2
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +2
Query: 476 AASRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESALKQQNQ 655
A +RP EP +++E+ +AA P PA+ A+E K+Q +
Sbjct: 2 AGKKRPPTALSEPEAAAAAEEEEAAAKTAP--------AAEAPAKKKKLAMER--KKQRK 51
Query: 656 PLDKKRKLDSNKSGAPKKK 712
+DK+R S +S A K
Sbjct: 52 EIDKERHRQSAESDAAAAK 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,619,902
Number of Sequences: 37544
Number of extensions: 404225
Number of successful extensions: 1278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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