Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N10
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   8.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   8.2  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
 Frame = -2

Query: 128 FPRDFVSVLVCKKVKFPQRAKRN-------VFVFQNLKEFPI 24
           F   F + +    V++PQ +KRN         + +N+ EFP+
Sbjct: 164 FAMPFATYVDINYVEYPQNSKRNSEESAICAMLKENMPEFPL 205


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 298 LLSDGRSCVQGCTTELRP 351
           LLSDG  CV+  +T + P
Sbjct: 70  LLSDGLMCVEKVSTTIVP 87


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 253 RTRHLTDIDKRFVHIFGQIIFY 188
           R   LT IDK F+H    II Y
Sbjct: 269 RLYELTKIDKWFLHKMKNIIDY 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,516
Number of Sequences: 438
Number of extensions: 4724
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)