Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N09
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    27   4.9  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 690 AFPP--GSSLVRSPV-PTLPXTGYRNTCPPFPPS 782
           + PP  GSS + +P+ PT+P T   +T  P PP+
Sbjct: 120 SIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT 153



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 690 AFPP--GSSLVRSPV-PTLPXTGYRNTCPPFPPS 782
           + PP  GSS + +P+ PT+P T   +T  P PP+
Sbjct: 177 SIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT 210



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 702 GSSLVRSPV-PTLPXTGYRNTCPPFPPS 782
           GSS + +P+ PT+P T   +T  P PP+
Sbjct: 239 GSSSLSTPITPTVPPTSTSSTSIPIPPT 266



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = +3

Query: 690 AFPPGSSLVRSPVPTLPXTGYRNTCPPFPP--SGKRGAFSXPTL 815
           + PP  +      PT+P T   +T  P PP  +   G  S P L
Sbjct: 344 SIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLL 387


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 761 LSAFPPFGKAWRFLIXH 811
           L AFPPF K +RF + H
Sbjct: 74  LRAFPPFTKKFRFYVGH 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,398
Number of Sequences: 5004
Number of extensions: 46805
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)