Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N08
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   142   8e-35
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.67 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.88 
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   4.7  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.2  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   8.2  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  142 bits (343), Expect = 8e-35
 Identities = 78/164 (47%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
 Frame = +1

Query: 190 GDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNPSAEEADEGTDSAVESGVDI 366
           GDE+ SD Y +K VD+++YE   ++VT  QG D+ I G NPSAE+A+E  +   E+  ++
Sbjct: 10  GDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAEEGTETVNNL 68

Query: 367 VLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFK 546
           V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL  FK
Sbjct: 69  VYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFK 126

Query: 547 ELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 678
           +  F+ GESMD D MV +M YR+ DG   P M+FFK GL  EKF
Sbjct: 127 DYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 358 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 504
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 719 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 606
           AS ELL+       NFS+ R CL+N ++  CVP   +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 265 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 408
           +T   G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 6   LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 634 VFAYHQSLYIPSWQPC-HHN 578
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 378 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 280
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,096
Number of Sequences: 5004
Number of extensions: 64579
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)