Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N05
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    34   0.032
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    31   0.30 
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    29   0.68 
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    29   0.90 
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   3.6  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   4.8  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   8.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   8.4  

>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
 Frame = +3

Query: 327 LXLELSPRVLRKRKSLMPEKSKPS-NRRVNMKPRKHVVAENANPKQIEALYLNKTVKSLS 503
           L  +    +LRKRK+  PE+ +P+ ++R +        AE  +P++I A  L    ++  
Sbjct: 428 LQADFKQAILRKRKNESPEEVEPAKHQRTDTSTENQETAEVLDPEEIAAAELANITEAAI 487

Query: 504 QTL--ETIYEEPKAESGDTEAVIG 569
            TL  ET+  +P+ E+ +  + +G
Sbjct: 488 ATLPQETVV-QPEGEAPELGSPMG 510


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 251  TRTPLSSVPCFFSVIYQFNSSLWFHDRSQKA*ISTALFIQ 132
            TR   SS+P FFS +YQ   SL+            A F+Q
Sbjct: 1415 TRGAFSSIPIFFSALYQSVRSLFIRSTPTNGEFENAAFLQ 1454


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 158 TPFASDRGTIMKN*IDI*R*KNMEHSRVECELPTKMAHLDI-MEVDELNTDVPKI 319
           TP +S R    +N +D    +   HS     LP K+AH  + +EV E N  V +I
Sbjct: 138 TPNSSSRSLFPQNGVDTTTSRQKLHSSGRFPLPAKLAHRSVEVEVAESNALVSRI 192


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 354 LRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPK 458
           L +RK++MP+K K  + + N +P K     N N K
Sbjct: 282 LFRRKTIMPKKDKKPSHKSNGRPNKLTAFFNKNSK 316


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 357 RKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVKS 497
           RK+++    K +P  +RVN +      +E  NP   + +YLN+ VK+
Sbjct: 531 RKKRNEDSWKRRPPAKRVNYQKFGDNFSEIGNPFCCDWVYLNEMVKA 577


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 601  WNVSSLFILRAPITASVSPLSALGSSYIVSN 509
            WNVS   +L AP     +PL  +  +++++N
Sbjct: 1323 WNVSPNIVLYAPKRFQNAPLKQMALNFVIAN 1353


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 444 NANPKQIEALYLNKTVKSLSQTLETIYEEPKAESGDTEA 560
           N  P  I  L +      L  TLETIY E K      EA
Sbjct: 697 NTTPSSISKLSIQPPTFQLFSTLETIYLELKDSMPPNEA 735


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 348 RVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNK 485
           R LR+RKSL+  + K  +  +N +    +V E A  K+  +L LN+
Sbjct: 224 RSLRRRKSLLSRQVKADDAVINYQDGSPIV-EKAYLKRHRSLRLNE 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,468
Number of Sequences: 5004
Number of extensions: 65477
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)