Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N05
(903 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0203 + 1555471-1555523,1555743-1555863,1556340-1556651,155... 31 0.95
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 29 3.8
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 29 5.1
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 29 6.7
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 29 6.7
08_01_0253 + 2072766-2072954,2073526-2073591,2073755-2073877,207... 28 8.8
06_01_0667 + 4878784-4878900,4879016-4879118,4879256-4879341,487... 28 8.8
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386... 28 8.8
03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310... 28 8.8
>06_01_0203 +
1555471-1555523,1555743-1555863,1556340-1556651,
1556806-1556910,1557009-1557466,1557886-1558187,
1558300-1558481,1558893-1559083,1559248-1559381,
1559487-1559725
Length = 698
Score = 31.5 bits (68), Expect = 0.95
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = -3
Query: 604 NWNVSSLFILRAPITASVSPLSALGSSYIVSNV*ERDLTVLLRYNASICFGFAFSATT 431
NWN S++ I A + +V P++A+ +YI + +R L ++ + + F+F T+
Sbjct: 540 NWNTSAVAIFLAILGLTVLPVNAVVGTYISNMFEDRQLLMVSQITLLVGIIFSFKITS 597
>05_05_0034 -
21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 345 PRVLRKRKSLMPEKSKPSNRR-VNMKPRKHVVAENANPKQIE 467
P+V+R+ + + S S + +N KP++ V +N NP +E
Sbjct: 363 PKVIREDRPAKKQMSTTSKEKPLNQKPKRKYVWKNRNPSSLE 404
>05_05_0030 -
21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 345 PRVLRKRKSLMPEKSKPSNRR-VNMKPRKHVVAENANPKQIE 467
P+V+R+ + + + S + +N KP++ V +N NP +E
Sbjct: 368 PKVIREDRPAKKQMATTSEEKPLNQKPKRKYVRKNRNPSSLE 409
>10_08_0838 -
20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +3
Query: 387 SKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVK---SLSQTLETIYEEPKAESGDTE 557
++ +NR ++ +KH++ + A YL +++K S Q+L+ Y + K E D
Sbjct: 201 NEKANRLQDLNQQKHLLEHRISESDSVATYLEESMKVTESRVQSLKLEYSKMKRERDDAV 260
Query: 558 AVIGARKIKRLLT 596
+ +I++ LT
Sbjct: 261 KEARSMRIEKELT 273
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 333 LELSPRVLRKRKSL--MPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVKSLSQ 506
+E+ R+ R++ ++ P S R+ +P V E+A PK + L N +++ +
Sbjct: 421 VEMKSRLAREQVAVERKPAASHVDKSRLPAQPSAGVKLESAKPKIYDGLESNSRLEAAKR 480
Query: 507 TLETIYEE 530
L+ Y+E
Sbjct: 481 RLQERYQE 488
>08_01_0253 +
2072766-2072954,2073526-2073591,2073755-2073877,
2073913-2074017,2074555-2074635,2074715-2074807,
2075023-2075098,2075182-2075261,2075359-2075430,
2075553-2075612,2075775-2075871,2076137-2076200,
2076303-2076362,2076539-2076608
Length = 411
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 468 PLFALGSHFRRQRVYEVSYSLGGLKVCFFLALTTFFYAKLLVIIQE 331
PL+A+G +F YEV ++GG +V + L +A L I E
Sbjct: 39 PLYAIGFNFLDFHYYEVFATVGGNRVTTYSCLKDGNFAILQAYIDE 84
>06_01_0667 +
4878784-4878900,4879016-4879118,4879256-4879341,
4879434-4879496,4879589-4879831,4880639-4880728,
4881403-4881600
Length = 299
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 481 LRYNASICFGFAFSATTCLRGFIF 410
L AS CFGFAF++ + G IF
Sbjct: 238 LNLAASFCFGFAFTSREAVTGSIF 261
>04_04_0861 +
28836544-28836609,28838191-28838264,28838551-28838671,
28838832-28839143,28839241-28839345,28839447-28839901,
28840116-28840417,28840589-28840767,28841256-28841446,
28841595-28841728,28841875-28842113
Length = 725
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 604 NWNVSSLFILRAPITASVSPLSALGSSYIVSNV*ERDLTV 485
NW+ S++ I A + +V P++A+ SYI + +R + V
Sbjct: 567 NWSTSAVAIFLAILGCTVLPVNAIVGSYITNLFEDRQILV 606
>03_01_0401 -
3108477-3108689,3108787-3108933,3109022-3109234,
3109321-3109938,3110045-3110584,3110941-3111041,
3111208-3111325,3111450-3111535,3111888-3112002
Length = 716
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Frame = +3
Query: 210 DAEKT---WNTREWSASYQLKWHI 272
D EKT W +W+ S LKWHI
Sbjct: 544 DFEKTLEYWQQDKWNGSLSLKWHI 567
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,912,783
Number of Sequences: 37544
Number of extensions: 355749
Number of successful extensions: 696
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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