Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N04
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 171 1e-43
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 156 4e-39
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 104 2e-23
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 80 3e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 74 2e-14
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 71 2e-13
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 71 2e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 69 8e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 66 8e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 63 4e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 63 4e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 60 3e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 60 5e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 58 2e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 58 2e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 57 3e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 56 8e-09
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 54 3e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 52 1e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 49 1e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 45 1e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 45 2e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 44 3e-05
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.84
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.9
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.6
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 27 2.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 3.4
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.5
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 4.5
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 5.9
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 5.9
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 7.8
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 7.8
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 171 bits (416), Expect = 1e-43
Identities = 79/102 (77%), Positives = 93/102 (91%)
Frame = +3
Query: 534 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 713
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 714 KCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMITRRGFP 839
+CHACIGGT VR+D+ ++GVHVVVGTPGRV+DMI RR P
Sbjct: 117 ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALP 158
Score = 82.2 bits (194), Expect = 8e-17
Identities = 34/50 (68%), Positives = 45/50 (90%)
Frame = +2
Query: 377 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 526
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 156 bits (378), Expect = 4e-39
Identities = 75/101 (74%), Positives = 85/101 (84%)
Frame = +3
Query: 528 KXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 707
K RDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+
Sbjct: 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 708 NAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMITRR 830
N +CHACIGGT+V DI++ + G HVV GTPGRV DMI RR
Sbjct: 117 NVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRR 157
Score = 59.7 bits (138), Expect = 5e-10
Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +2
Query: 377 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 532
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +G
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG 58
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 104 bits (249), Expect = 2e-23
Identities = 50/100 (50%), Positives = 67/100 (67%)
Frame = +3
Query: 519 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 698
+A RD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG
Sbjct: 77 IALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLG 136
Query: 699 DHLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDM 818
H+N K GGT +R+DI + VH+VVGTPGRV D+
Sbjct: 137 KHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDL 176
Score = 43.6 bits (98), Expect = 4e-05
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +2
Query: 329 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 496
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 497 IQQRAIMPCIQG 532
IQ+ +I + G
Sbjct: 70 IQEESIPIALSG 81
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 80.2 bits (189), Expect = 3e-16
Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Frame = +3
Query: 519 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 698
L++ R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G
Sbjct: 149 LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 208
Query: 699 DHLNAKCHACIGGTNVREDI-RQPESGVHVVVGTPGRVYDMITRR 830
+ K +++ + + + +V+GTPG V D++ RR
Sbjct: 209 KYTEVKT-----AFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRR 248
Score = 43.6 bits (98), Expect = 4e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +2
Query: 416 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 514
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 74.1 bits (174), Expect = 2e-14
Identities = 43/105 (40%), Positives = 59/105 (56%)
Frame = +3
Query: 534 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 713
R+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG +LN
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNL 104
Query: 714 KCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMITRRGFPXIA 848
K +GG ++ HVVV TPGR+ D+I G IA
Sbjct: 105 KHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIA 149
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 71.3 bits (167), Expect = 2e-13
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = +3
Query: 534 RDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQKVVI 689
+D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 690 ALGDHLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMITRRGF 836
+ L +C + +GG E Q G H+VV TPGR+ D + RR F
Sbjct: 347 KFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLF 395
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 70.9 bits (166), Expect = 2e-13
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +3
Query: 534 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 713
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 714 KCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMI-TRRGF 836
+ +GG ++ HV+V TPGR+ D + +GF
Sbjct: 144 RSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGF 185
Score = 31.5 bits (68), Expect = 0.16
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +2
Query: 281 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 460
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 461 GIYAYGFEKPSAIQQRAI 514
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 68.9 bits (161), Expect = 8e-13
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Frame = +3
Query: 537 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 713
DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +L +
Sbjct: 90 DVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDV 149
Query: 714 KCHACIGGTNVREDI---RQPESGVHVVVGTPGRVYDMITRR 830
+ GG N+++D+ + H+VV TPGR+ ++ +
Sbjct: 150 RTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREK 191
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/37 (54%), Positives = 21/37 (56%)
Frame = +2
Query: 425 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGT 535
F D LK ELLR I GFE PS +QQ I I GT
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGT 89
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 65.7 bits (153), Expect = 8e-12
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Frame = +3
Query: 522 ASKXRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIAL 695
AS D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + +
Sbjct: 156 ASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELI 215
Query: 696 GDHLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMI 821
N + + GG V++ R HVVV TPGR++ +I
Sbjct: 216 KPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVI 257
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 63.3 bits (147), Expect = 4e-11
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Frame = +3
Query: 519 LASKXRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVI 689
LA +D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V
Sbjct: 292 LALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVAT 351
Query: 690 ALGDHLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYD-MITRRGF 836
+ + CIGG +++ ++ +V+ TPGR D M +GF
Sbjct: 352 KIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGF 401
Score = 32.7 bits (71), Expect = 0.068
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 422 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 586
+F MNL +L+G+ GFE P+ IQ + I + G ++ + K F+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFI 314
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 63.3 bits (147), Expect = 4e-11
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Frame = +3
Query: 519 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIA 692
L + RDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 102 LLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKD 161
Query: 693 LGDHLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGR 806
+ + A +GG ++ E +VV TPGR
Sbjct: 162 FSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGR 199
Score = 33.1 bits (72), Expect = 0.051
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 425 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 532
F M L + LLR I+ GF+ P+ IQ++ I ++G
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG 106
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 60.5 bits (140), Expect = 3e-10
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Frame = +3
Query: 522 ASKXRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVI 689
A K RD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLV 132
Query: 690 ALGDHLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMI 821
+G + IGG N +E+ ++ S ++++V TPGR+ I
Sbjct: 133 KIGRLHSFSAGLIIGGNNYKEE-KERLSRMNILVCTPGRLLQHI 175
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 59.7 bits (138), Expect = 5e-10
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Frame = +3
Query: 519 LASKXRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQ 677
L + +D +AQ+G+GKT + + I+Q++ T A+I+APTREL QQI
Sbjct: 174 LNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIY 233
Query: 678 KVVIALGD----HLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYD 815
V L + H C+ IGG + + + GV++++GTPGR+ D
Sbjct: 234 NVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRLAD 282
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 58.0 bits (134), Expect = 2e-09
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = +3
Query: 534 RDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDH 704
RDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +L
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQG 262
Query: 705 LNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMI 821
N K GG E R ++ V++GTPGR+ D+I
Sbjct: 263 TNLKAVVVYGGAPKSEQARAAKN-ASVIIGTPGRLLDLI 300
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.6 bits (133), Expect = 2e-09
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Frame = +3
Query: 519 LASKXRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQK 680
LA + +D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+
Sbjct: 47 LALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYN 106
Query: 681 VVIALGDHLNAKCHACIGGTNVREDIRQP--ESGVHVVVGTPGR 806
V+ L + TN + +++P +V+ TP R
Sbjct: 107 VLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSR 150
Score = 34.7 bits (76), Expect = 0.017
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 419 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 532
+TF D NL L R I+ FEKP+++Q I ++G
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEG 51
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 57.2 bits (132), Expect = 3e-09
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Frame = +3
Query: 534 RDVIAQAQSGTGKTATFSISILQQIDTS--IRECQ---ALILAPTRELAQQIQKVVIALG 698
RDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFL 515
Query: 699 DHLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMIT 824
LN + GG +++ I + G +VV TPGR+ D+++
Sbjct: 516 KLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLS 557
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 401 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTR 538
D + V ++ L + + I + G+EKP++IQ +AI P I R
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI-PAITSGR 456
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 55.6 bits (128), Expect = 8e-09
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Frame = +3
Query: 534 RDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGD 701
RDV+ A++G+GKT F +I +L + R +I++PTRELA QI V L
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLK 186
Query: 702 HLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMI-TRRGF 836
+ + IGG N R + + GV+++V TPGR+ D + +GF
Sbjct: 187 YHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGF 232
Score = 36.3 bits (80), Expect = 0.006
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 416 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 586
+E F D+ L E + + I GFE + IQ+R+I P + G ++ + K FL
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 54.0 bits (124), Expect = 3e-08
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Frame = +3
Query: 519 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKV 683
+A RD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 155 MAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQE 214
Query: 684 VIALGDHLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMI 821
G + GG IR GV + + TPGR+ DM+
Sbjct: 215 CTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDML 260
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 416 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 511
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 51.6 bits (118), Expect = 1e-07
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Frame = +3
Query: 519 LASKXRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LIL 644
+ + RD++A AQ+G+GKTA F IL Q R +A LIL
Sbjct: 202 IVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLIL 261
Query: 645 APTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMIT 824
APTREL QI + + A GG ++R IRQ + G ++ TPGR+ D+I
Sbjct: 262 APTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLID 321
Query: 825 R 827
R
Sbjct: 322 R 322
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 48.8 bits (111), Expect = 1e-06
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Frame = +3
Query: 528 KXRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL- 695
K +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V L
Sbjct: 37 KNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELL 96
Query: 696 ---------GDHLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMIT 824
G L A + GT + E VV+GTPGR+ +M++
Sbjct: 97 AYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEMLS 148
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 45.2 bits (102), Expect = 1e-05
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Frame = +3
Query: 537 DVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHLNA 713
DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 175 DVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGL 234
Query: 714 KCHACIGGTNVREDIRQ-----PESGVHVVVGTPGRVYDMI 821
+ A G ++R + Q E + V+V TPGR+ D I
Sbjct: 235 QVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHI 275
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.8 bits (101), Expect = 2e-05
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Frame = +3
Query: 537 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGD 701
+ + QA++GTGKT F + + + + + ++IL+PTRELA QI + L
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTY 137
Query: 702 HLNAKCHACIGG-TNVREDIRQPESGVHVVVGTPGRVYD 815
+ IGG + +RE+ ++++ TPGR+ D
Sbjct: 138 GTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 44.0 bits (99), Expect = 3e-05
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Frame = +3
Query: 534 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQKVVIALGDHLN 710
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI + L +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTS 143
Query: 711 AK-CHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMI 821
K ++E + + +GTP R+ I
Sbjct: 144 LKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAI 181
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.1 bits (62), Expect = 0.84
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 540 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVI 689
VI + +GK+ + I ILQ + + A + PT+ LAQ +K +I
Sbjct: 329 VIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLAQDQKKSLI 377
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 389 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 481
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 561 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 677
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 392 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 526
LDT+W V + NL+ + + I + F PS I + MP +
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSL 228
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 593 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 694
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 366 DLREWTLGHLTPT 404
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 4.5
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Frame = +3
Query: 537 DVIAQAQSGTGKTATFSISILQQIDTSIRE--------CQALILAPTRELAQQIQKVVIA 692
+++ A +G GKT + IL ++ +RE + + +AP + L Q++
Sbjct: 537 NILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSK 596
Query: 693 LGDHLNAKCHACIGGTNVREDIRQPESGVHVVVGTPGRVYDMITRR 830
N + G + + +Q S ++V TP + +D+ITR+
Sbjct: 597 RLTPYNIRVAELTGDSQL---TKQQISETQIIVTTPEK-WDIITRK 638
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 707 QVITKSYHHLLNLLGQLSCGSQDQ 636
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 767 RLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 666
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 672 IQKVVIALGDHLNAKCHACIGGTNVRED 755
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 386 QGPFPEVHRNYLDPSMAHFWNPLANL 309
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,588
Number of Sequences: 5004
Number of extensions: 71623
Number of successful extensions: 247
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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