Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N03
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   130   3e-31
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   130   3e-31
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    43   7e-05
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    27   3.6  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   6.3  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.4  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  130 bits (314), Expect = 3e-31
 Identities = 58/72 (80%), Positives = 68/72 (94%)
 Frame = +2

Query: 218 RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVN 397
           RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN
Sbjct: 47  RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106

Query: 398 NKGEMKGSAITG 433
            KGEMKGSAITG
Sbjct: 107 PKGEMKGSAITG 118



 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 26/41 (63%), Positives = 37/41 (90%)
 Frame = +1

Query: 85  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 207
           RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFG 43



 Score = 35.1 bits (77), Expect = 0.014
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 432 GPVAKECADLWPR 470
           GPVAKECADLWPR
Sbjct: 118 GPVAKECADLWPR 130


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  130 bits (314), Expect = 3e-31
 Identities = 58/72 (80%), Positives = 68/72 (94%)
 Frame = +2

Query: 218 RLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVN 397
           RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN
Sbjct: 47  RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106

Query: 398 NKGEMKGSAITG 433
            KGEMKGSAITG
Sbjct: 107 PKGEMKGSAITG 118



 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 26/41 (63%), Positives = 37/41 (90%)
 Frame = +1

Query: 85  RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 207
           RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G
Sbjct: 3   RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFG 43



 Score = 35.1 bits (77), Expect = 0.014
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 432 GPVAKECADLWPR 470
           GPVAKECADLWPR
Sbjct: 118 GPVAKECADLWPR 130


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
 Frame = +2

Query: 239 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 391
           A  GD +V  VKK +            R  +  A+++R + P RR DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 392 VNNKGEMKGSAI 427
           VN + E  G+ I
Sbjct: 91  VNKECEPLGTRI 102


>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = -2

Query: 483  RLRQYAATDQHILWLQXPVMAEPFISPLLLT--MTPALSSKYINTPSRLLNGFRCLMTTA 310
            RL  +    + + W       + F+  ++    +  ALSS+Y    S L        +T 
Sbjct: 744  RLLTFQTNPEELEWQLFLDDTQAFVKSIIAVANLAKALSSEYTFQKSVLAGLSAATRSTK 803

Query: 309  GITFFRSSGLPFLTVATIMSPEPAAGSLFRRPLIALDS 196
             +T   SS     T +++ +P P    + R P   L +
Sbjct: 804  DLTILLSSSARHYTESSLATPVPLMSPIARVPATPLSA 841


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 272 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 382
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 420 EPFISPLLLTMTPALSSKYINTPS 349
           +P+  P+L +  P L   Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,724
Number of Sequences: 5004
Number of extensions: 59909
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)