Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_N03
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 138 4e-33
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 138 4e-33
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 138 4e-33
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 51 1e-06
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 6.6
02_02_0500 - 10993675-10994067,10994434-10995738 29 6.6
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 28 8.8
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 138 bits (335), Expect = 4e-33
Identities = 63/77 (81%), Positives = 73/77 (94%)
Frame = +2
Query: 203 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 382
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 43 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 102
Query: 383 GVIVNNKGEMKGSAITG 433
GVIVN KGEMKGSAITG
Sbjct: 103 GVIVNPKGEMKGSAITG 119
Score = 82.2 bits (194), Expect = 5e-16
Identities = 36/44 (81%), Positives = 41/44 (93%)
Frame = +1
Query: 76 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 207
MSKRGRGGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+G
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKG 44
Score = 33.1 bits (72), Expect = 0.31
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 432 GPVAKECADLWPR 470
GP+ KECADLWPR
Sbjct: 119 GPIGKECADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 138 bits (335), Expect = 4e-33
Identities = 63/77 (81%), Positives = 73/77 (94%)
Frame = +2
Query: 203 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 382
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 43 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 102
Query: 383 GVIVNNKGEMKGSAITG 433
GVIVN KGEMKGSAITG
Sbjct: 103 GVIVNPKGEMKGSAITG 119
Score = 82.2 bits (194), Expect = 5e-16
Identities = 36/44 (81%), Positives = 41/44 (93%)
Frame = +1
Query: 76 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 207
MSKRGRGGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+G
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKG 44
Score = 33.1 bits (72), Expect = 0.31
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 432 GPVAKECADLWPR 470
GP+ KECADLWPR
Sbjct: 119 GPIGKECADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 138 bits (335), Expect = 4e-33
Identities = 63/77 (81%), Positives = 73/77 (94%)
Frame = +2
Query: 203 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 382
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 60 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 119
Query: 383 GVIVNNKGEMKGSAITG 433
GVIVN KGEMKGSAITG
Sbjct: 120 GVIVNPKGEMKGSAITG 136
Score = 74.5 bits (175), Expect = 1e-13
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +1
Query: 88 GRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 207
GRGGSAG KFR+SLGLPV A +NCADNTGAKNLY+I+V+G
Sbjct: 22 GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKG 61
Score = 33.1 bits (72), Expect = 0.31
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 432 GPVAKECADLWPR 470
GP+ KECADLWPR
Sbjct: 136 GPIGKECADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 51.2 bits (117), Expect = 1e-06
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Frame = +2
Query: 248 GDMIVATVKKGKPELRKK---VMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 418
GD I+ +VK+ +P + K V+ VV+R R DG I F+DNA V+VNNKGE+ G
Sbjct: 84 GDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIG 143
Query: 419 SAITG 433
+ + G
Sbjct: 144 TRVFG 148
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 388 DTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 251
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -2
Query: 432 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTT---AGITFFR-SSGLPFLTV 265
P EP I+ + ++PA+ +T S + NG+ +M+T G+ F + SSG + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284
Query: 264 ATIMSPEPAA 235
+ EP A
Sbjct: 285 FKPIDEEPMA 294
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 176 APVLSAQLITAPTGRPREIRNFAPAEPPRP 87
AP S+ L TAP P + + FAP PP P
Sbjct: 328 APNASSSLFTAPV--PADRQQFAPPPPPSP 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,695,065
Number of Sequences: 37544
Number of extensions: 444654
Number of successful extensions: 1283
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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