Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N03
         (898 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA...   151   1e-36
M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal prot...   136   3e-32
U43733-1|AAA86639.1|  904|Drosophila melanogaster Abrupt protein.      31   2.8  
BT003807-1|AAO41490.1|  369|Drosophila melanogaster AT11330p pro...    31   2.8  
BT001583-1|AAN71338.1|  894|Drosophila melanogaster RE25924p pro...    31   2.8  
AE014134-2051|AAN10774.1|  894|Drosophila melanogaster CG4807-PB...    31   2.8  
AE014134-2050|AAF53087.2|  904|Drosophila melanogaster CG4807-PA...    31   2.8  
Z11527-1|CAA77616.1|  614|Drosophila melanogaster CYS3HIS finger...    29   8.6  
BT021256-1|AAX33404.1|  608|Drosophila melanogaster RE58038p pro...    29   8.6  
AE014297-3282|AAO41594.1|  599|Drosophila melanogaster CG4620-PB...    29   8.6  
AE014297-3281|AAO41593.1|  599|Drosophila melanogaster CG4620-PA...    29   8.6  

>AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA
           protein.
          Length = 140

 Score =  151 bits (366), Expect = 1e-36
 Identities = 72/75 (96%), Positives = 73/75 (97%)
 Frame = +2

Query: 209 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 388
           I+GRLNRLPAAG GDM VATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV
Sbjct: 45  IRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 104

Query: 389 IVNNKGEMKGSAITG 433
           IVNNKGEMKGSAITG
Sbjct: 105 IVNNKGEMKGSAITG 119



 Score = 87.4 bits (207), Expect = 2e-17
 Identities = 40/44 (90%), Positives = 42/44 (95%)
 Frame = +1

Query: 76  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 207
           MSKRGRGG+AG KFRISLGLPVGAV+NCADNTGAKNLYVIAV G
Sbjct: 1   MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHG 44



 Score = 35.1 bits (77), Expect = 0.13
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 432 GPVAKECADLWPR 470
           GPVAKECADLWPR
Sbjct: 119 GPVAKECADLWPR 131


>M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal protein
           L17A protein.
          Length = 140

 Score =  136 bits (330), Expect = 3e-32
 Identities = 66/75 (88%), Positives = 67/75 (89%)
 Frame = +2

Query: 209 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 388
           I+GRLNRLPAAG GDM VATVKKGKPELRKKV      RQRKPFRRRDGVFIYFEDNAGV
Sbjct: 45  IRGRLNRLPAAGVGDMFVATVKKGKPELRKKVSVVPSARQRKPFRRRDGVFIYFEDNAGV 104

Query: 389 IVNNKGEMKGSAITG 433
           IVNNKGEMKGSAITG
Sbjct: 105 IVNNKGEMKGSAITG 119



 Score = 87.4 bits (207), Expect = 2e-17
 Identities = 40/44 (90%), Positives = 42/44 (95%)
 Frame = +1

Query: 76  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 207
           MSKRGRGG+AG KFRISLGLPVGAV+NCADNTGAKNLYVIAV G
Sbjct: 1   MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHG 44



 Score = 35.1 bits (77), Expect = 0.13
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 432 GPVAKECADLWPR 470
           GPVAKECADLWPR
Sbjct: 119 GPVAKECADLWPR 131


>U43733-1|AAA86639.1|  904|Drosophila melanogaster Abrupt protein.
          Length = 904

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 381 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPLIA 205
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L     +A
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPLA 843

Query: 204 LDS 196
           L+S
Sbjct: 844 LNS 846


>BT003807-1|AAO41490.1|  369|Drosophila melanogaster AT11330p
           protein.
          Length = 369

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 381 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPLIA 205
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L     +A
Sbjct: 250 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPLA 308

Query: 204 LDS 196
           L+S
Sbjct: 309 LNS 311


>BT001583-1|AAN71338.1|  894|Drosophila melanogaster RE25924p
           protein.
          Length = 894

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 381 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPLIA 205
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L     +A
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPLA 833

Query: 204 LDS 196
           L+S
Sbjct: 834 LNS 836


>AE014134-2051|AAN10774.1|  894|Drosophila melanogaster CG4807-PB,
           isoform B protein.
          Length = 894

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 381 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPLIA 205
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L     +A
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPLA 833

Query: 204 LDS 196
           L+S
Sbjct: 834 LNS 836


>AE014134-2050|AAF53087.2|  904|Drosophila melanogaster CG4807-PA,
           isoform A protein.
          Length = 904

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 381 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPLIA 205
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L     +A
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPLA 843

Query: 204 LDS 196
           L+S
Sbjct: 844 LNS 846


>Z11527-1|CAA77616.1|  614|Drosophila melanogaster CYS3HIS finger
           protein protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 323 RQRKPFRRRDGVFIYFEDN 379
           R+R+P R+RDG F Y  DN
Sbjct: 72  RRRRPVRKRDGTFNYSADN 90


>BT021256-1|AAX33404.1|  608|Drosophila melanogaster RE58038p
           protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 323 RQRKPFRRRDGVFIYFEDN 379
           R+R+P R+RDG F Y  DN
Sbjct: 66  RRRRPVRKRDGTFNYSADN 84


>AE014297-3282|AAO41594.1|  599|Drosophila melanogaster CG4620-PB,
           isoform B protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 323 RQRKPFRRRDGVFIYFEDN 379
           R+R+P R+RDG F Y  DN
Sbjct: 57  RRRRPVRKRDGTFNYSADN 75


>AE014297-3281|AAO41593.1|  599|Drosophila melanogaster CG4620-PA,
           isoform A protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 323 RQRKPFRRRDGVFIYFEDN 379
           R+R+P R+RDG F Y  DN
Sbjct: 57  RRRRPVRKRDGTFNYSADN 75


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,031,483
Number of Sequences: 53049
Number of extensions: 740510
Number of successful extensions: 2058
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2058
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4362070239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)