Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N03
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   134   6e-32
Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical pr...    31   1.5  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  134 bits (325), Expect = 6e-32
 Identities = 63/75 (84%), Positives = 68/75 (90%)
 Frame = +2

Query: 209 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 388
           I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104

Query: 389 IVNNKGEMKGSAITG 433
           IVNNKGEMKGSAITG
Sbjct: 105 IVNNKGEMKGSAITG 119



 Score = 84.6 bits (200), Expect = 9e-17
 Identities = 38/44 (86%), Positives = 43/44 (97%)
 Frame = +1

Query: 76  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQG 207
           MSKRGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V G
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYG 44



 Score = 35.1 bits (77), Expect = 0.069
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 432 GPVAKECADLWPR 470
           GPVAKECADLWPR
Sbjct: 119 GPVAKECADLWPR 131


>Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical
           protein F58B3.5 protein.
          Length = 917

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +1

Query: 73  KMSKRGRGGSAGAKF--RISLG---LPVGAVINCADNTGAKNLYVIAVQGYQRSPEQTAG 237
           K  K+G+GG+A A     I +G   + VG +I C  +  A  LYV  +   + +P     
Sbjct: 737 KEQKKGKGGAAAAPVDDTIDVGRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVS 796

Query: 238 GRFR 249
           G  R
Sbjct: 797 GLVR 800


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,890,876
Number of Sequences: 27780
Number of extensions: 357338
Number of successful extensions: 862
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)