Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N03
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = -1

Query: 319 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDSL 203
           D C  Y +    +T  DCG    P   +R   Q   + +
Sbjct: 471 DQCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQLAINHI 509


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = -1

Query: 319 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDSL 203
           D C  Y +    +T  DCG    P   +R   Q   + +
Sbjct: 561 DQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQLAINHI 599


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 447 LWLQXPVMAEPFISPLLLTMTPALSSKYINTPSRLL 340
           +W+   V+   F SP    M+P +   ++N   RLL
Sbjct: 327 IWITVCVLNVHFRSPSTHNMSPWVRQVFLNWMPRLL 362


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 243 VPGT*LWPQSKRVNLNSGKR--*CRQWSSGSGNRS 341
           +P T LW ++ R+ +++ K+    + WS  S N +
Sbjct: 439 IPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNA 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,380
Number of Sequences: 438
Number of extensions: 4758
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)