Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_N02
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/73 (24%), Positives = 20/73 (27%)
 Frame = +2

Query: 605 PPXXGGXXXPPXGRGLXTXKXXGXXPXRXXPPPXXXGGGGGXXXXXPPPXRXLKXPPPPP 784
           PP       PP G G               PPP             PP  R    PPPP 
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLP--------PPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367

Query: 785 XXXXXXKKSRPXS 823
                 ++  P S
Sbjct: 368 SAPSTGRQPPPLS 380


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +3

Query: 687 GXXPPQXXXGVGGVXTXGXPPPXEX*KXPPPPP 785
           G  PP    GV G    G PPP      PPPPP
Sbjct: 760 GPPPPPPPPGVAGA---GPPPP------PPPPP 783



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 682 PXXXPPPKXXRGWGGXXXXGPPPPXXXKKXPPPP 783
           P   PPP    G  G     PPPP      PPPP
Sbjct: 748 PIPVPPPAPIMG--GPPPP-PPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 695 PPPXXXGGGGGXXXXXPPPXRXLKXPPPPP 784
           PPP    GG       PPP      PPPPP
Sbjct: 752 PPPAPIMGG--PPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.147    0.507 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,208
Number of Sequences: 5004
Number of extensions: 19558
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)