Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M23
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    28   2.0  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   6.2  

>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 526 APPPRRASQKSTLKSEVAKPDRTIKIP 606
           APPPRRA+   +  +  A P RT+  P
Sbjct: 8   APPPRRAAPARSASTAAALPPRTMAPP 34


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 536 LDEHHKNRRSSQRWRNPTGL*RYQAF----PPG 622
           L ++HKNR+S+     P GL  Y+A     PPG
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,317,821
Number of Sequences: 5004
Number of extensions: 67168
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)