Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M23
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           36   0.043
07_01_1201 - 11419851-11419913,11420090-11420311                       30   2.1  
12_02_1188 + 26801833-26802225                                         30   2.8  
03_06_0149 - 31987183-31987630,31987813-31987874                       30   2.8  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    29   6.5  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.5  
12_01_0442 + 3495333-3496484                                           28   8.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.6  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 710 RKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETPG 603
           R R   RR  GG+V+G+   R+RR   GA +GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 569 QRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 673
           Q+WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 27  QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 680 GGQVSGKRQGRNRRAHEGAXQGETPGIFIVLSG 582
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 716 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETP 606
           A+ + H   R +   +  +R+GR R AHEG   G  P
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112


>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
            7782225-7782324,7782720-7782801,7782928-7782940,
            7783621-7783681
          Length = 1433

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 524  RLRPLDEHHKNRRSSQRWRNPT 589
            R RPL E   +  SS RWRNPT
Sbjct: 1333 RHRPLTEGSPHPLSSARWRNPT 1354


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 339 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 494
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>12_01_0442 + 3495333-3496484
          Length = 383

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 529 PPPRRASQKSTLKSEVAKPDRTIKIPG-VSPWXAPSCALLFRPCRLPDTCPP 681
           P  R  + ++T  +  + PD  I  PG   P  +P   L+ R  +LP T PP
Sbjct: 156 PEHRAPAARTTTAAPASPPDSPIWTPGHKPPSSSPDIYLVRRTPKLPVTRPP 207


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 288 NESAN---ARGEAVCVLGALPLPRSLTRCAR 371
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,972,382
Number of Sequences: 37544
Number of extensions: 542354
Number of successful extensions: 1688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)