Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M23
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.30 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   4.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   4.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.9  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 18/72 (25%), Positives = 27/72 (37%)
 Frame = -1

Query: 710 RKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETPGIFIVLSGFATSDLSVDFCDARRGG 531
           ++ H S   KG  +    Q   R   +    G TP  F + +    +   +D   +RRG 
Sbjct: 597 KREHRSSSTKGITIQEPPQWHTRSTEKRVSAG-TPAAFNISTTIYENQNCLDASSSRRGS 655

Query: 530 GAYGKTPATRPF 495
                TPA   F
Sbjct: 656 KIGSPTPAESTF 667


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 456 TCEQKASKRPGTVKRPR--CWRFSIGSAPSTSITKIDAQVRGGETRQDYKDTR 608
           T      +R   V +PR   WR +I S  +        ++  G + +D+K TR
Sbjct: 382 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTR 434


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 456 TCEQKASKRPGTVKRPR--CWRFSIGSAPSTSITKIDAQVRGGETRQDYKDTR 608
           T      +R   V +PR   WR +I S  +        ++  G + +D+K TR
Sbjct: 297 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTR 349


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 456 TCEQKASKRPGTVKRPR--CWRFSIGSAPSTSITKIDAQVRGGETRQDYKDTR 608
           T      +R   V +PR   WR +I S  +        ++  G + +D+K TR
Sbjct: 616 TAPNAEERRVQGVTKPRYMVWRETISSTATLGFRVEGIKLAHGGSSKDFKTTR 668


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 707 KRHASRREKGGQVSGKRQGRNRRAH 633
           KR  +++ +G + +     +NRRAH
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAH 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,111
Number of Sequences: 438
Number of extensions: 5657
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)