Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M19
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    29   0.86 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    27   2.6  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   8.0  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    26   8.0  

>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +2

Query: 692 LAYSLFLLFTGNTFN*YFCH*IGDYLKLHYILAFXLSSLTWCLILXFFFDY 844
           ++YSL  +FTG      FCH  G  L    +L F  + L  CL L     Y
Sbjct: 132 ISYSLTTIFTG------FCHNFGGLLAARLVLGFCEAGLFPCLALYLTMIY 176


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 514 LH-QASKVKSLHVLSATEPKDQSKPSVTKII*TKAH 410
           LH Q  K++SL +LS +E K       TK++ TKA+
Sbjct: 3   LHCQEPKIRSLDMLSNSEIKPSENSQKTKVLLTKAN 38


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = -2

Query: 527 FG*NTASSKQGQVAPRPISNRAQGPVKTLSNQNHLNKGTFHNMFQTQHWSRRGLERNVTK 348
           F   TASS  G+    P S+R   PV     +N      F N     H +  G   N ++
Sbjct: 606 FNNETASSNAGETTALPYSSRFMNPV-----ENRSANSPFDNFQHIDHSTELGYASNTSQ 660


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 758 GDYLKLHYILAFXLSSLTWCLILXFFFDYVTXFEL 862
           G    LH   +F +    W LIL FF   V  F L
Sbjct: 77  GGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGL 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,008
Number of Sequences: 5004
Number of extensions: 63586
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)