Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M19
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0280 + 2152000-2153510,2153633-2153732                           31   0.90 
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321...    31   1.6  
02_05_1019 - 33549576-33550247,33550885-33551121,33551206-335513...    29   3.6  
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133...    28   8.4  
04_04_0381 - 24839505-24839918,24840009-24840779,24841369-248417...    28   8.4  

>03_01_0280 + 2152000-2153510,2153633-2153732
          Length = 536

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
 Frame = +2

Query: 8   SXYRXHYREPLKIYCHKY---VSRLS---IS*GTLPVALLKFCNCDQRCSKQCVFPTLPF 169
           S  R   +  L +Y H++   VSR S   +    LP+ L  F    +RC+ Q VF  L F
Sbjct: 126 SWRRQRAKTQLLMYNHRFQSFVSRCSSDKVENALLPL-LSHFAGTGERCNLQDVFMRLTF 184

Query: 170 EMINVVLSASDARIGCIRS*FNQLKISVTRA 262
           +M  ++ S  D   GC+       K+   RA
Sbjct: 185 DMSTMLASGEDP--GCLAISLPMPKVPFVRA 213


>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
            16032434-16032715,16032790-16032948,16033034-16033390,
            16033482-16033622,16033919-16034045,16034121-16034263,
            16034740-16034917,16035019-16035552,16035628-16035812,
            16036551-16036637,16036710-16036850,16036896-16037175,
            16037944-16038020,16038326-16039138,16039292-16039801,
            16039926-16040056,16040192-16040246,16040364-16040564,
            16040640-16040909,16041103-16041184,16041271-16041434,
            16041532-16041690,16041762-16042083,16042158-16042544,
            16042811-16042999,16043233-16043317,16043458-16043753,
            16043862-16043965,16044484-16044513,16044602-16044817,
            16044923-16045540,16045718-16045993,16046619-16046762,
            16046854-16046962,16047291-16047475,16047557-16047670,
            16048348-16048479,16048929-16049249,16049424-16049891,
            16054482-16054547,16054691-16054828,16054917-16055015,
            16057098-16057194,16057661-16057761,16057858-16058085,
            16059175-16059381,16059451-16059571,16059921-16059988,
            16060148-16060213,16060396-16060509,16060949-16061300,
            16063571-16063663,16063764-16063922,16064224-16064287,
            16064385-16064577,16064673-16064710,16065510-16065645,
            16065726-16065914,16065994-16066095,16067660-16067777,
            16067861-16067964,16070338-16070346,16071428-16071475,
            16071581-16071676,16072430-16072533,16073964-16074045,
            16076573-16076601,16076708-16076963
          Length = 4246

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 506  SKQGQVAPRPISNRAQGPVKTLSNQNHLNKGTFHNMFQTQHWSRRGLERNVTKI*SQS 333
            S Q ++ P+    R   P+KT  +Q H  K   H +F+    +   LE  VT + S++
Sbjct: 2742 SDQYKIFPQSARTRCVKPLKTCESQTHHAKWNEHFIFEVPEQASAHLEIEVTNLASKA 2799


>02_05_1019 -
           33549576-33550247,33550885-33551121,33551206-33551317,
           33551998-33552215,33553084-33553194
          Length = 449

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +3

Query: 183 LYCL-LVMLELVVFAHSLTN*KSQSRELPVFLFYFRLKQ 296
           LYC+ L +L LV+FAH + N ++  + + V +  +RLKQ
Sbjct: 126 LYCIFLAVLGLVLFAHLIGNVQTYLQSITVRVEEWRLKQ 164


>11_06_0653 +
           25911162-25911272,25911648-25911694,25912877-25913355,
           25914089-25914249,25914324-25914519,25914745-25914807,
           25914898-25915047,25915148-25915494
          Length = 517

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -2

Query: 155 ETHIVLSIFDHNCRILKGQPEAYLKKYLASIH 60
           ET + ++I+DHN  I+  +P + ++ ++ +IH
Sbjct: 87  ETPLKVAIYDHNNEIMTCEPFSSMRVHIVAIH 118


>04_04_0381 -
           24839505-24839918,24840009-24840779,24841369-24841730,
           24842452-24842830
          Length = 641

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 758 GDYLKLHYILAFXLSSLTWCLI 823
           GD +K H+ LAF ++ L+W +I
Sbjct: 183 GDNIKFHFPLAFSMTMLSWSVI 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,460,704
Number of Sequences: 37544
Number of extensions: 364902
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)