Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M18
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   200   2e-52
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   200   2e-52
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   3.7  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   6.4  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  200 bits (489), Expect = 2e-52
 Identities = 100/220 (45%), Positives = 137/220 (62%)
 Frame = +1

Query: 184 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 363
           Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AA
Sbjct: 39  QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98

Query: 364 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 543
           Y+TG                              E +++GP  F+ +LDVGL RT+TG+R
Sbjct: 99  YATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSR 158

Query: 544 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDS 723
           VFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ 
Sbjct: 159 VFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEER 218

Query: 724 FKRXFSKYIKLGVTADAIXSHLQESP*KPSVRIHPTXRKS 843
           +++ FS  I  G+ +D +     E+  K  +R  P+ +KS
Sbjct: 219 YQKQFSGLIADGIESDQLEDIYAEAYAK--IREDPSFQKS 256



 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +3

Query: 69  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLXCSGQEQ 197
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL    + +
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  200 bits (489), Expect = 2e-52
 Identities = 100/220 (45%), Positives = 137/220 (62%)
 Frame = +1

Query: 184 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 363
           Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AA
Sbjct: 39  QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98

Query: 364 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 543
           Y+TG                              E +++GP  F+ +LDVGL RT+TG+R
Sbjct: 99  YATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSR 158

Query: 544 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDS 723
           VFGAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ 
Sbjct: 159 VFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEER 218

Query: 724 FKRXFSKYIKLGVTADAIXSHLQESP*KPSVRIHPTXRKS 843
           +++ FS  I  G+ +D +     E+  K  +R  P+ +KS
Sbjct: 219 YQKQFSGLIADGIESDQLEDIYAEAYAK--IREDPSFQKS 256



 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +3

Query: 69  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLXCSGQEQ 197
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL    + +
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 400 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 308
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 682  AEYMRSLEQDDEDSFKRXFSKYIK 753
            +EY+++L   D  SFK+ F K+I+
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,448,424
Number of Sequences: 5004
Number of extensions: 69088
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)