Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M18
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   219   3e-57
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   217   8e-57

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  219 bits (534), Expect = 3e-57
 Identities = 107/223 (47%), Positives = 146/223 (65%)
 Frame = +1

Query: 184 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 363
           QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40  QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96

Query: 364 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 543
           Y TG                          +Y VEP D     FR  LDVGL RTTTG R
Sbjct: 97  YCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNR 155

Query: 544 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDS 723
           VFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + 
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEK 215

Query: 724 FKRXFSKYIKLGVTADAIXSHLQESP*KPSVRIHPTXRKS*RK 852
           F+  FS+Y+K G+ AD + S  ++     ++R  PT  KS +K
Sbjct: 216 FQAHFSEYLKKGIDADGMESLYKKV--HAAIRADPTMAKSTKK 256



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 26/35 (74%), Positives = 28/35 (80%)
 Frame = +3

Query: 72  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 176
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRL 37


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  217 bits (531), Expect = 8e-57
 Identities = 106/223 (47%), Positives = 146/223 (65%)
 Frame = +1

Query: 184 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 363
           QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40  QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96

Query: 364 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGAR 543
           Y TG                          +Y VEP D     FR  LDVGL RTTTG R
Sbjct: 97  YCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNR 155

Query: 544 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDS 723
           VFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + 
Sbjct: 156 VFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEK 215

Query: 724 FKRXFSKYIKLGVTADAIXSHLQESP*KPSVRIHPTXRKS*RK 852
           F+  FS+Y+K G+ AD + +  ++     ++R  PT  KS +K
Sbjct: 216 FQAHFSEYLKKGIDADGMEALYKKV--HAAIRADPTMAKSTKK 256



 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 25/35 (71%), Positives = 27/35 (77%)
 Frame = +3

Query: 72  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 176
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRL 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,087,185
Number of Sequences: 37544
Number of extensions: 439947
Number of successful extensions: 935
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)