Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M17
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.17 
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    28   1.6  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    27   2.7  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    27   3.6  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    26   6.3  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   6.3  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    26   6.3  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   6.3  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    26   6.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.3  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +2

Query: 485 TKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAETGKSYIDTATENTKSAA 664
           T  +L++++ N+  +A +  ++   TVSS+   T S + TAA +  +   +A  NT S  
Sbjct: 223 TSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLL 282

Query: 665 QS 670
            S
Sbjct: 283 PS 284


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 509 ADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSRIRYK 685
           ++ +   +ESA+N+   +VSS      S    ++   +S +     NT  +AQS +RY+
Sbjct: 292 SNGSSPTSESALNSPASSVSSLPSLGASQTTDSSSLNQSSLLRRPANTYFSAQSYLRYQ 350


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 603 PRRKPENRTSTLPQRTRNRRPNPAFDT 683
           P  +P++R+ +LP    N  PNP  D+
Sbjct: 336 PSSQPQSRSESLPLTHPNSEPNPKLDS 362


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 609 RKPENRTSTLPQRTRNRRPNPAFDTSKTFAASARDTAQDSLQT 737
           R+     S  P+R R    +PA++ SK+++A+   + + S  T
Sbjct: 289 RRDAYSRSPSPRRDREENRSPAYEGSKSYSAAPEASMESSAPT 331


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 464 HQLRLCWRRPQPLLLQATPS 405
           H    CWR   PL+ +A PS
Sbjct: 391 HSYPFCWRSDTPLIYRAVPS 410


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 476 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 616
           +DT   T++TT  +      + + +A DTV  T+E  +  A T   T
Sbjct: 213 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 259



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 476 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 616
           +DT   T++TT  +      + + +A DTV  T+E  +  A T   T
Sbjct: 285 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 331



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 476 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 616
           +DT   T++TT  +      + + +A DTV  T+E  +  A T   T
Sbjct: 357 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 403



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 476 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 616
           +DT   T++TT  +      + + +A DTV  T+E  +  A T   T
Sbjct: 429 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 475



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 476 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 616
           +DT   T++TT  +      + + +A DTV  T+E  +  A T   T
Sbjct: 501 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 547



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 476 LDTTKDTLSTTADNTKKAAESAINTAKDTVSSTLESTKSAAQTAAET 616
           +DT   T++TT  +      + + +A DTV  T+E  +  A T   T
Sbjct: 573 VDTAAGTVTTTIYSGTTPFNTTLASATDTVPGTVEVVEPEAGTVTTT 619


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 750 YVSAAYSAIDIGRTCLETAKDTLANTCRHYKENSTKHLRN-WKN 878
           YV   Y  I+I  +  E   D LA    H++ N+T  + + W+N
Sbjct: 65  YVPGEY--IEINASTFEKRTDILAKVLEHWRHNNTFGIADQWRN 106


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 473 PSSHQLRLCWRRPQPLLLQATP 408
           P  H+    WR  +PL+L+ATP
Sbjct: 419 PYKHRYPYDWRTHKPLILRATP 440


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = +3

Query: 588 NRLLRPRRKPENRTSTLPQRTRNRRPNPAFDTSKTFAASARDTAQDSLQTTLNS 749
           NR L PRR  ENR   L +R R  +      + K     A        QT + +
Sbjct: 535 NRGLTPRRPKENRNPRLKKRMRYEKAKKKLASKKAIYKGAPQGGYAGEQTGIKA 588


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +2

Query: 476  LDTTKDTLSTTADNTKKA-AESAINTAKDTVSSTLESTKSAA--QTAAETGKSYI-DTAT 643
            L ++  T S T   T    A S+ ++ + T SST+ +  SAA   + A +G S +  +AT
Sbjct: 1078 LSSSIATASVTGSPTSSVTAVSSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSAT 1137

Query: 644  ENTKSAA 664
             ++ S+A
Sbjct: 1138 ASSSSSA 1144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,795
Number of Sequences: 5004
Number of extensions: 57770
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)