Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M16
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   4.7  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   8.2  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 319 VHSRKSLFHCHSRIFETSGTASFQVARWRPVLQHLVTKPESLSLLQTFPSSFPE 158
           +H    +FH    +F +S   S+     +P+L          + L T PSSF E
Sbjct: 195 IHFINFVFHSLLAVFFSSKYTSYAQKEGQPILNATENLEVEYNALNTTPSSFEE 248


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 253 RTPFPKFQKYESDSETDSCGSEQQEE 330
           R+P PK +  E D E +   S++ EE
Sbjct: 180 RSPSPKIEILEDDEEIEDVASDKDEE 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,143
Number of Sequences: 5004
Number of extensions: 50662
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)