Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M16
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p...    29   3.3  
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane...    29   3.3  
AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical...    29   5.8  

>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
            K08E5.3b protein.
          Length = 3183

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 184  EAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSETDSC 309
            E K+GF+  SPD   R  +  P   P P  +    D E + C
Sbjct: 1900 ECKRGFMDRSPDSSQRGRVCEPPPPPSPPPRHPCQDPERNDC 1941


>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
            K08E5.3a protein.
          Length = 3767

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 184  EAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSETDSC 309
            E K+GF+  SPD   R  +  P   P P  +    D E + C
Sbjct: 2484 ECKRGFMDRSPDSSQRGRVCEPPPPPSPPPRHPCQDPERNDC 2525


>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
            protein K08E5.3b protein.
          Length = 3183

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 184  EAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSETDSC 309
            E K+GF+  SPD   R  +  P   P P  +    D E + C
Sbjct: 1900 ECKRGFMDRSPDSSQRGRVCEPPPPPSPPPRHPCQDPERNDC 1941


>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
            protein K08E5.3a protein.
          Length = 3767

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 184  EAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSETDSC 309
            E K+GF+  SPD   R  +  P   P P  +    D E + C
Sbjct: 2484 ECKRGFMDRSPDSSQRGRVCEPPPPPSPPPRHPCQDPERNDC 2525


>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
            adhesion receptorMUA-3 precursor protein.
          Length = 3767

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 184  EAKKGFLASSPDVEVRASIAPPGRTPFPKFQKYESDSETDSC 309
            E K+GF+  SPD   R  +  P   P P  +    D E + C
Sbjct: 2484 ECKRGFMDRSPDSSQRGRVCEPPPPPSPPPRHPCQDPERNDC 2525


>AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical
           protein F45C12.3 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +1

Query: 274 QKYESDSETDSCGSEQQEEYLD--NELLHXXXXXXXXQTLDSERFEHIPVLRTPKRHVSR 447
           ++YE D +    G  ++ E L+  N+L +           D+E+FE    ++TP   V  
Sbjct: 299 REYEEDKKLKEPGEHEETEKLEKPNKLENSKKFMELETQDDNEKFEETKEIKTPMEPVKL 358

Query: 448 RTALEITRRRIDFDLPEYTELGDLQK 525
               E  +     +L E+ EL  L +
Sbjct: 359 E---ETEKLEKPSELKEFNELAQLNE 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,310,629
Number of Sequences: 27780
Number of extensions: 273234
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)