Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M12
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|...    52   2e-07
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.6  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    26   8.7  

>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = +3

Query: 333 IREIADKQINQFEWNATPMRINNRCVITSRPRGIVKEWRMSRIVWRHLADYNKLSGVQRA 512
           +R  A K+I     NA P +I NRC+ T R RG+ + + ++R  +R  A  NKL GV++A
Sbjct: 44  VRLEAKKRIEALPTNAHPTKIKNRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKA 103

Query: 513 MW 518
            W
Sbjct: 104 SW 105


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 899 PPPPPPXXXKKKXKXK 852
           PPPPPP    KK K K
Sbjct: 24  PPPPPPPGYVKKRKNK 39


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 76  DKYKHRNRNKLKSLGKDHNELKYLNFRKIHSKITINS 186
           D+   R+R K+K L  D       +  K+HS +T NS
Sbjct: 66  DRIAKRSRKKIKPLKVDQILENKSSIEKVHSHLTNNS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,687
Number of Sequences: 5004
Number of extensions: 43201
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)