Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M12
         (928 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99297-3|CAB16601.1|  128|Homo sapiens mitochondrial ribosomal p...    86   2e-16
BC009788-1|AAH09788.1|  128|Homo sapiens mitochondrial ribosomal...    86   2e-16
AL049705-1|CAB41269.1|  128|Homo sapiens hypothetical protein pr...    86   2e-16
AB051350-1|BAB54940.1|   39|Homo sapiens mitochondrial ribosomal...    44   6e-04
AK055346-1|BAB70906.1|  372|Homo sapiens protein ( Homo sapiens ...    31   5.9  
AB049117-1|BAB39481.1|  372|Homo sapiens actin related protein p...    31   5.9  

>Z99297-3|CAB16601.1|  128|Homo sapiens mitochondrial ribosomal
           protein S14 protein.
          Length = 128

 Score = 85.8 bits (203), Expect = 2e-16
 Identities = 34/62 (54%), Positives = 51/62 (82%)
 Frame = +3

Query: 333 IREIADKQINQFEWNATPMRINNRCVITSRPRGIVKEWRMSRIVWRHLADYNKLSGVQRA 512
           ++++AD++I     ++ P+RI NRCV+TSRPRG+ + WR+SRIV+RHLAD+ +LSG+QRA
Sbjct: 67  LQDVADEEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGQLSGIQRA 126

Query: 513 MW 518
            W
Sbjct: 127 TW 128



 Score = 50.8 bits (116), Expect = 7e-06
 Identities = 23/41 (56%), Positives = 31/41 (75%)
 Frame = +2

Query: 203 QVRNKWANWLMIRDVKRRRLSAENFLERTRVNALRKNDILP 325
           QVR+ + +W M RDVKRR+++ E   ER R+N+LRKN ILP
Sbjct: 24  QVRSHYVDWRMWRDVKRRKMAYEYADERLRINSLRKNTILP 64


>BC009788-1|AAH09788.1|  128|Homo sapiens mitochondrial ribosomal
           protein S14 protein.
          Length = 128

 Score = 85.8 bits (203), Expect = 2e-16
 Identities = 34/62 (54%), Positives = 51/62 (82%)
 Frame = +3

Query: 333 IREIADKQINQFEWNATPMRINNRCVITSRPRGIVKEWRMSRIVWRHLADYNKLSGVQRA 512
           ++++AD++I     ++ P+RI NRCV+TSRPRG+ + WR+SRIV+RHLAD+ +LSG+QRA
Sbjct: 67  LQDVADEEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGQLSGIQRA 126

Query: 513 MW 518
            W
Sbjct: 127 TW 128



 Score = 50.8 bits (116), Expect = 7e-06
 Identities = 23/41 (56%), Positives = 31/41 (75%)
 Frame = +2

Query: 203 QVRNKWANWLMIRDVKRRRLSAENFLERTRVNALRKNDILP 325
           QVR+ + +W M RDVKRR+++ E   ER R+N+LRKN ILP
Sbjct: 24  QVRSHYVDWRMWRDVKRRKMAYEYADERLRINSLRKNTILP 64


>AL049705-1|CAB41269.1|  128|Homo sapiens hypothetical protein
           protein.
          Length = 128

 Score = 85.8 bits (203), Expect = 2e-16
 Identities = 34/62 (54%), Positives = 51/62 (82%)
 Frame = +3

Query: 333 IREIADKQINQFEWNATPMRINNRCVITSRPRGIVKEWRMSRIVWRHLADYNKLSGVQRA 512
           ++++AD++I     ++ P+RI NRCV+TSRPRG+ + WR+SRIV+RHLAD+ +LSG+QRA
Sbjct: 67  LQDVADEEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGQLSGIQRA 126

Query: 513 MW 518
            W
Sbjct: 127 TW 128



 Score = 50.8 bits (116), Expect = 7e-06
 Identities = 23/41 (56%), Positives = 31/41 (75%)
 Frame = +2

Query: 203 QVRNKWANWLMIRDVKRRRLSAENFLERTRVNALRKNDILP 325
           QVR+ + +W M RDVKRR+++ E   ER R+N+LRKN ILP
Sbjct: 24  QVRSHYVDWRMWRDVKRRKMAYEYADERLRINSLRKNTILP 64


>AB051350-1|BAB54940.1|   39|Homo sapiens mitochondrial ribosomal
           protein S14 protein.
          Length = 39

 Score = 44.4 bits (100), Expect = 6e-04
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = +2

Query: 224 NWLMIRDVKRRRLSAENFLERTRVNALRKNDILP 325
           +W M RDVKRR+++ E   ER R+N+LRKN ILP
Sbjct: 2   DWRMWRDVKRRKMAYEYADERLRINSLRKNTILP 35


>AK055346-1|BAB70906.1|  372|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30784 fis, clone FEBRA2000881, moderately
           similar to ACTIN 6. ).
          Length = 372

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 426 RGIVKEWRMSRIVWRHLADYN 488
           RG++  W    I+W+H+ DYN
Sbjct: 72  RGLITSWEDMEIMWKHIYDYN 92


>AB049117-1|BAB39481.1|  372|Homo sapiens actin related protein
           protein.
          Length = 372

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 426 RGIVKEWRMSRIVWRHLADYN 488
           RG++  W    I+W+H+ DYN
Sbjct: 72  RGLITSWEDMEIMWKHIYDYN 92


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,211,118
Number of Sequences: 237096
Number of extensions: 1651609
Number of successful extensions: 8087
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7851
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)