Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_M12
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48809-3|CAA88746.2|  199|Caenorhabditis elegans Hypothetical pr...    53   3e-07

>Z48809-3|CAA88746.2|  199|Caenorhabditis elegans Hypothetical
           protein T01E8.6 protein.
          Length = 199

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 27/62 (43%), Positives = 38/62 (61%)
 Frame = +3

Query: 333 IREIADKQINQFEWNATPMRINNRCVITSRPRGIVKEWRMSRIVWRHLADYNKLSGVQRA 512
           IR+ A +++ +      P  I N C  T R RG +K +R+SR ++R  AD + LSGVQRA
Sbjct: 138 IRDEAAEKMQKARKYDHPRLILNMCQFTGRQRGKIKPYRLSRHLFRRFADRSALSGVQRA 197

Query: 513 MW 518
           MW
Sbjct: 198 MW 199



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +2

Query: 218 WANWLMIRDVKRRRLSAENFLERTRVNALRKNDILP 325
           WA+W  +RDVKRR    E   +R R+ A++ N ILP
Sbjct: 100 WASWRQLRDVKRREQIQEVGADRMRLKAIKFNTILP 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,768,878
Number of Sequences: 27780
Number of extensions: 263256
Number of successful extensions: 1448
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)